RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 EXOC4Q96A65 974 aa20.26■□□□□ 0.83
CDX1-202ENST00000616154 CEP295NLQ96MC4 621 aa20.26■□□□□ 0.83
CDX1-202ENST00000616154 P2RY13Q9BPV8 354 aa20.26■□□□□ 0.83
CDX1-202ENST00000616154 FBRSL1Q9HCM7 1045 aaKnown RBP20.26■□□□□ 0.83
CDX1-202ENST00000616154 GCNT4Q9P109 453 aa20.26■□□□□ 0.83
CDX1-202ENST00000616154 SLC8A2Q9UPR5 921 aa20.26■□□□□ 0.83
CDX1-202ENST00000616154 ACACBO00763 2458 aa20.25■□□□□ 0.83
CDX1-202ENST00000616154 RNF40O75150 1001 aa20.25■□□□□ 0.83
CDX1-202ENST00000616154 ATP2C2O75185 946 aa20.25■□□□□ 0.83
CDX1-202ENST00000616154 GALK1P51570 392 aa20.25■□□□□ 0.83
CDX1-202ENST00000616154 NDUFA8P51970 172 aa20.25■□□□□ 0.83
CDX1-202ENST00000616154 PSMD2Q13200 908 aa20.25■□□□□ 0.83
CDX1-202ENST00000616154 MAPRE1Q15691 268 aaKnown RBP20.25■□□□□ 0.83
CDX1-202ENST00000616154 VSTM1Q6UX27 236 aa20.25■□□□□ 0.83
CDX1-202ENST00000616154 MYLPFQ96A32 169 aa20.25■□□□□ 0.83
CDX1-202ENST00000616154 SPATA17Q96L03 361 aa20.25■□□□□ 0.83
CDX1-202ENST00000616154 CYP2S1Q96SQ9 504 aa20.25■□□□□ 0.83
CDX1-202ENST00000616154 ECT2Q9H8V3 914 aa20.25■□□□□ 0.83
CDX1-202ENST00000616154 CRTAC1Q9NQ79 661 aa20.25■□□□□ 0.83
CDX1-202ENST00000616154 DUS2Q9NX74 493 aaKnown RBP20.25■□□□□ 0.83
CDX1-202ENST00000616154 MAGEC2Q9UBF1 373 aaPredicted RBP20.25■□□□□ 0.83
CDX1-202ENST00000616154 EPG5Q9HCE0 2579 aa20.24■□□□□ 0.83
CDX1-202ENST00000616154 LOC105378220A0A1B0GUY1 285 aaPredicted RBP20.24■□□□□ 0.83
CDX1-202ENST00000616154 RPP40O75818 363 aaKnown RBP20.24■□□□□ 0.83
CDX1-202ENST00000616154 TCF3P15923 654 aa20.24■□□□□ 0.83
CDX1-202ENST00000616154 WARSP23381 471 aaKnown RBP20.24■□□□□ 0.83
CDX1-202ENST00000616154 LMO2P25791 158 aa20.24■□□□□ 0.83
CDX1-202ENST00000616154 SYKP43405 635 aa20.24■□□□□ 0.83
CDX1-202ENST00000616154 IFNAR2P48551 515 aa20.24■□□□□ 0.83
CDX1-202ENST00000616154 PSMC1P62191 440 aaKnown RBP20.24■□□□□ 0.83
CDX1-202ENST00000616154 KNOP1Q1ED39 458 aaKnown RBP20.24■□□□□ 0.83
CDX1-202ENST00000616154 FBXO43Q4G163 708 aa20.24■□□□□ 0.83
CDX1-202ENST00000616154 HS2ST1Q7LGA3 356 aa20.24■□□□□ 0.83
CDX1-202ENST00000616154 CAMKK1Q8N5S9 505 aa20.24■□□□□ 0.83
CDX1-202ENST00000616154 KIAA0895Q8NCT3 520 aa20.24■□□□□ 0.83
CDX1-202ENST00000616154 ATP2A3Q93084 1043 aa20.24■□□□□ 0.83
CDX1-202ENST00000616154 LOXL4Q96JB6 756 aa20.24■□□□□ 0.83
CDX1-202ENST00000616154 SLC39A2Q9NP94 309 aa20.24■□□□□ 0.83
CDX1-202ENST00000616154 WNT6Q9Y6F9 365 aa20.24■□□□□ 0.83
CDX1-202ENST00000616154 CNOT1A5YKK6 2376 aaKnown RBP20.23■□□□□ 0.83
CDX1-202ENST00000616154 AKAP3O75969 853 aa20.23■□□□□ 0.83
CDX1-202ENST00000616154 PFKLP17858 780 aa20.23■□□□□ 0.83
CDX1-202ENST00000616154 PXNP49023 591 aaPredicted RBP20.23■□□□□ 0.83
CDX1-202ENST00000616154 PDE6CP51160 858 aa20.23■□□□□ 0.83
CDX1-202ENST00000616154 STK4Q13043 487 aa20.23■□□□□ 0.83
CDX1-202ENST00000616154 KCNB1Q14721 858 aa20.23■□□□□ 0.83
CDX1-202ENST00000616154 SNRNP35Q16560 246 aaKnown RBP20.23■□□□□ 0.83
CDX1-202ENST00000616154 EML3Q32P44 896 aa20.23■□□□□ 0.83
CDX1-202ENST00000616154 KMT5BQ4FZB7 885 aa20.23■□□□□ 0.83
CDX1-202ENST00000616154 NAIF1Q69YI7 327 aaPredicted RBP20.23■□□□□ 0.83
CDX1-202ENST00000616154 TRAPPC11Q7Z392 1133 aa20.23■□□□□ 0.83
CDX1-202ENST00000616154 CACNA2D4Q7Z3S7 1137 aa20.23■□□□□ 0.83
CDX1-202ENST00000616154 ARL14EPQ8N8R7 260 aaPredicted RBP20.23■□□□□ 0.83
CDX1-202ENST00000616154 GOLGA5Q8TBA6 731 aa20.23■□□□□ 0.83
CDX1-202ENST00000616154 ARHGAP26Q9UNA1 814 aa20.23■□□□□ 0.83
CDX1-202ENST00000616154 C2orf78A6NCI8 922 aa20.22■□□□□ 0.83
CDX1-202ENST00000616154 EPN2O95208 641 aa20.22■□□□□ 0.83
CDX1-202ENST00000616154 BDNFP23560 247 aa20.22■□□□□ 0.83
CDX1-202ENST00000616154 RAP1GAPP47736 663 aa20.22■□□□□ 0.83
CDX1-202ENST00000616154 PSMD6Q15008 389 aa20.22■□□□□ 0.83
CDX1-202ENST00000616154 NELFCDQ8IXH7 590 aa20.22■□□□□ 0.83
CDX1-202ENST00000616154 XXYLT1Q8NBI6 393 aa20.22■□□□□ 0.83
CDX1-202ENST00000616154 MYCBPAPQ8TBZ2 947 aa20.22■□□□□ 0.83
CDX1-202ENST00000616154 SH3RF2Q8TEC5 729 aa20.22■□□□□ 0.83
CDX1-202ENST00000616154 EZH1Q92800 747 aaPredicted RBP20.22■□□□□ 0.83
CDX1-202ENST00000616154 CD101Q93033 1021 aa20.22■□□□□ 0.83
CDX1-202ENST00000616154 GBP4Q96PP9 640 aa20.22■□□□□ 0.83
CDX1-202ENST00000616154 GZF1Q9H116 711 aaPredicted RBP20.22■□□□□ 0.83
CDX1-202ENST00000616154 GOLPH3LQ9H4A5 285 aa20.22■□□□□ 0.83
CDX1-202ENST00000616154 EXOC1Q9NV70 894 aa20.22■□□□□ 0.83
CDX1-202ENST00000616154 CACNA1BQ00975 2339 aa20.22■□□□□ 0.83
CDX1-202ENST00000616154 PDGFRBP09619 1106 aa20.21■□□□□ 0.83
CDX1-202ENST00000616154 CCDC192P0DO97 292 aa20.21■□□□□ 0.83
CDX1-202ENST00000616154 HDCP19113 662 aa20.21■□□□□ 0.83
CDX1-202ENST00000616154 ANXA13P27216 316 aa20.21■□□□□ 0.83
CDX1-202ENST00000616154 GRIK1P39086 918 aa20.21■□□□□ 0.83
CDX1-202ENST00000616154 CYP27A1Q02318 531 aa20.21■□□□□ 0.83
CDX1-202ENST00000616154 CYP24A1Q07973 514 aa20.21■□□□□ 0.83
CDX1-202ENST00000616154 KRBA2Q6ZNG9 492 aa20.21■□□□□ 0.83
CDX1-202ENST00000616154 DENND5BQ6ZUT9 1274 aa20.21■□□□□ 0.83
CDX1-202ENST00000616154 SYT13Q7L8C5 426 aa20.21■□□□□ 0.83
CDX1-202ENST00000616154 KBTBD6Q86V97 674 aa20.21■□□□□ 0.83
CDX1-202ENST00000616154 SLC9A9Q8IVB4 645 aa20.21■□□□□ 0.83
CDX1-202ENST00000616154 TTC16Q8NEE8 873 aa20.21■□□□□ 0.83
CDX1-202ENST00000616154 PCED1BQ96HM7 432 aa20.21■□□□□ 0.83
CDX1-202ENST00000616154 MMS19Q96T76 1030 aa20.21■□□□□ 0.83
CDX1-202ENST00000616154 CGRRF1Q99675 332 aa20.21■□□□□ 0.83
CDX1-202ENST00000616154 TTLL2Q9BWV7 592 aa20.21■□□□□ 0.83
CDX1-202ENST00000616154 KCTD10Q9H3F6 313 aa20.21■□□□□ 0.83
CDX1-202ENST00000616154 DMAC2Q9NW81 257 aa20.21■□□□□ 0.83
CDX1-202ENST00000616154 EHD2Q9NZN4 543 aa20.21■□□□□ 0.83
CDX1-202ENST00000616154 TRIM66O15016 1216 aa20.2■□□□□ 0.82
CDX1-202ENST00000616154 AXIN1O15169 862 aa20.2■□□□□ 0.82
CDX1-202ENST00000616154 GDF9O60383 454 aa20.2■□□□□ 0.82
CDX1-202ENST00000616154 TACC1O75410 805 aa20.2■□□□□ 0.82
CDX1-202ENST00000616154 RHOBTB3O94955 611 aa20.2■□□□□ 0.82
CDX1-202ENST00000616154 ADRB1P08588 477 aa20.2■□□□□ 0.82
CDX1-202ENST00000616154 FAM163BP0C2L3 166 aa20.2■□□□□ 0.82
CDX1-202ENST00000616154 DLATP10515 647 aaKnown RBP20.2■□□□□ 0.82
CDX1-202ENST00000616154 TNNI1P19237 187 aa20.2■□□□□ 0.82
Retrieved 100 of 20,778 RNA–protein pairs in 41.8 ms