RNA–Protein interactions for RNA: ENST00000611852.4

CCDC28A-202, Transcript of coiled-coil domain containing 28A, humanhuman

TSL 1 (best) BASIC

Gene CCDC28A, Length 1,505 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28A-202ENST00000611852 PLCD3Q8N3E9 789 aa17.53■□□□□ 0.4
CCDC28A-202ENST00000611852 SHC3Q92529 594 aa17.53■□□□□ 0.4
CCDC28A-202ENST00000611852 EPS15L1Q9UBC2 864 aa17.53■□□□□ 0.4
CCDC28A-202ENST00000611852 SIK3Q9Y2K2 1263 aa17.53■□□□□ 0.4
CCDC28A-202ENST00000611852 MYH10P35580 1976 aa17.53■□□□□ 0.4
CCDC28A-202ENST00000611852 A0A1W2PRU2 124 aa17.52■□□□□ 0.4
CCDC28A-202ENST00000611852 GOLGA6L19H0YKK7 550 aa17.52■□□□□ 0.4
CCDC28A-202ENST00000611852 LAMP2P13473 410 aa17.52■□□□□ 0.4
CCDC28A-202ENST00000611852 KRT5P13647 590 aa17.52■□□□□ 0.4
CCDC28A-202ENST00000611852 UCHL3P15374 230 aa17.52■□□□□ 0.4
CCDC28A-202ENST00000611852 GJA1P17302 382 aa17.52■□□□□ 0.4
CCDC28A-202ENST00000611852 SSTR3P32745 418 aaPredicted RBP17.52■□□□□ 0.4
CCDC28A-202ENST00000611852 MAP3K7CLP57077 242 aa17.52■□□□□ 0.4
CCDC28A-202ENST00000611852 ZNF445P59923 1031 aa17.52■□□□□ 0.4
CCDC28A-202ENST00000611852 USP46P62068 366 aa17.52■□□□□ 0.4
CCDC28A-202ENST00000611852 TPM4P67936 248 aa17.52■□□□□ 0.4
CCDC28A-202ENST00000611852 SYCP1Q15431 976 aa17.52■□□□□ 0.4
CCDC28A-202ENST00000611852 SMYD5Q6GMV2 418 aa17.52■□□□□ 0.4
CCDC28A-202ENST00000611852 POTEHQ6S545 545 aa17.52■□□□□ 0.4
CCDC28A-202ENST00000611852 TMEM150AQ86TG1 271 aa17.52■□□□□ 0.4
CCDC28A-202ENST00000611852 TFAP2BQ92481 460 aa17.52■□□□□ 0.4
CCDC28A-202ENST00000611852 ERGIC2Q96RQ1 377 aa17.52■□□□□ 0.4
CCDC28A-202ENST00000611852 ZSWIM1Q9BR11 485 aa17.52■□□□□ 0.4
CCDC28A-202ENST00000611852 NAA15Q9BXJ9 866 aaKnown RBP17.52■□□□□ 0.4
CCDC28A-202ENST00000611852 DUSP16Q9BY84 665 aa17.52■□□□□ 0.4
CCDC28A-202ENST00000611852 RTN4Q9NQC3 1192 aaKnown RBP17.52■□□□□ 0.4
CCDC28A-202ENST00000611852 FHOD1Q9Y613 1164 aa17.52■□□□□ 0.4
CCDC28A-202ENST00000611852 ZFP37Q9Y6Q3 630 aaPredicted RBP17.52■□□□□ 0.4
CCDC28A-202ENST00000611852 O00370 1275 aa17.52■□□□□ 0.39
CCDC28A-202ENST00000611852 TNFRSF10BO14763 440 aa17.52■□□□□ 0.39
CCDC28A-202ENST00000611852 CALCAP01258 141 aa17.52■□□□□ 0.39
CCDC28A-202ENST00000611852 F11P03951 625 aa17.52■□□□□ 0.39
CCDC28A-202ENST00000611852 NPR3P17342 541 aa17.52■□□□□ 0.39
CCDC28A-202ENST00000611852 RFX1P22670 979 aa17.52■□□□□ 0.39
CCDC28A-202ENST00000611852 CDC25CP30307 473 aa17.52■□□□□ 0.39
CCDC28A-202ENST00000611852 TEAD2Q15562 447 aa17.52■□□□□ 0.39
CCDC28A-202ENST00000611852 ANKRD52Q8NB46 1076 aa17.52■□□□□ 0.39
CCDC28A-202ENST00000611852 TTLL2Q9BWV7 592 aa17.52■□□□□ 0.39
CCDC28A-202ENST00000611852 GANQ9H2C0 597 aa17.52■□□□□ 0.39
CCDC28A-202ENST00000611852 FAM207AQ9NSI2 230 aaPredicted RBP17.52■□□□□ 0.39
CCDC28A-202ENST00000611852 GDE1Q9NZC3 331 aa17.52■□□□□ 0.39
CCDC28A-202ENST00000611852 UXTQ9UBK9 157 aaPredicted RBP17.52■□□□□ 0.39
CCDC28A-202ENST00000611852 TSPAN16Q9UKR8 245 aa17.52■□□□□ 0.39
CCDC28A-202ENST00000611852 A0A1B0GTH6 734 aa17.51■□□□□ 0.39
CCDC28A-202ENST00000611852 TEX33O43247 280 aa17.51■□□□□ 0.39
CCDC28A-202ENST00000611852 GOLGA7BQ2TAP0 167 aa17.51■□□□□ 0.39
CCDC28A-202ENST00000611852 FILIP1LQ4L180 1135 aa17.51■□□□□ 0.39
CCDC28A-202ENST00000611852 TTC30AQ86WT1 665 aa17.51■□□□□ 0.39
CCDC28A-202ENST00000611852 NUP93Q8N1F7 819 aa17.51■□□□□ 0.39
CCDC28A-202ENST00000611852 MCRS1Q96EZ8 462 aa17.51■□□□□ 0.39
CCDC28A-202ENST00000611852 NAP1L5Q96NT1 182 aaPredicted RBP17.51■□□□□ 0.39
CCDC28A-202ENST00000611852 COL25A1Q9BXS0 654 aaPredicted RBP17.51■□□□□ 0.39
CCDC28A-202ENST00000611852 GPR88Q9GZN0 384 aa17.51■□□□□ 0.39
CCDC28A-202ENST00000611852 ATXN3LQ9H3M9 355 aa17.51■□□□□ 0.39
CCDC28A-202ENST00000611852 EHD2Q9NZN4 543 aa17.51■□□□□ 0.39
CCDC28A-202ENST00000611852 LIMD1Q9UGP4 676 aa17.51■□□□□ 0.39
CCDC28A-202ENST00000611852 HHLA1C9JL84 531 aa17.5■□□□□ 0.39
CCDC28A-202ENST00000611852 FOXN3O00409 490 aaPredicted RBP17.5■□□□□ 0.39
CCDC28A-202ENST00000611852 EPHB6O15197 1021 aa17.5■□□□□ 0.39
CCDC28A-202ENST00000611852 SERPINC1P01008 464 aa17.5■□□□□ 0.39
CCDC28A-202ENST00000611852 BRD2P25440 801 aaKnown RBP17.5■□□□□ 0.39
CCDC28A-202ENST00000611852 USP8P40818 1118 aa17.5■□□□□ 0.39
CCDC28A-202ENST00000611852 SLC5A3P53794 718 aa17.5■□□□□ 0.39
CCDC28A-202ENST00000611852 RAPGEF1Q13905 1077 aa17.5■□□□□ 0.39
CCDC28A-202ENST00000611852 CNGA2Q16280 664 aa17.5■□□□□ 0.39
CCDC28A-202ENST00000611852 STXBP5Q5T5C0 1151 aa17.5■□□□□ 0.39
CCDC28A-202ENST00000611852 LCLAT1Q6UWP7 414 aa17.5■□□□□ 0.39
CCDC28A-202ENST00000611852 SCAMP5Q8TAC9 235 aa17.5■□□□□ 0.39
CCDC28A-202ENST00000611852 ZSWIM3Q96MP5 696 aa17.5■□□□□ 0.39
CCDC28A-202ENST00000611852 GCNAQ96QF7 691 aa17.5■□□□□ 0.39
CCDC28A-202ENST00000611852 PNPLA8Q9NP80 782 aa17.5■□□□□ 0.39
CCDC28A-202ENST00000611852 ACP6Q9NPH0 428 aa17.5■□□□□ 0.39
CCDC28A-202ENST00000611852 IL37Q9NZH6 218 aa17.5■□□□□ 0.39
CCDC28A-202ENST00000611852 HESX1Q9UBX0 185 aa17.5■□□□□ 0.39
CCDC28A-202ENST00000611852 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.5■□□□□ 0.39
CCDC28A-202ENST00000611852 ZNF638Q14966 1978 aaKnown RBP17.5■□□□□ 0.39
CCDC28A-202ENST00000611852 PATJQ8NI35 1801 aa17.49■□□□□ 0.39
CCDC28A-202ENST00000611852 TADA3O75528 432 aa17.49■□□□□ 0.39
CCDC28A-202ENST00000611852 RTN3O95197 1032 aaPredicted RBP17.49■□□□□ 0.39
CCDC28A-202ENST00000611852 PNMA6AP0CW24 399 aaPredicted RBP17.49■□□□□ 0.39
CCDC28A-202ENST00000611852 CYP4F8P98187 520 aa17.49■□□□□ 0.39
CCDC28A-202ENST00000611852 FANCCQ00597 558 aa17.49■□□□□ 0.39
CCDC28A-202ENST00000611852 DRAP1Q14919 205 aaPredicted RBP17.49■□□□□ 0.39
CCDC28A-202ENST00000611852 STILQ15468 1287 aa17.49■□□□□ 0.39
CCDC28A-202ENST00000611852 PKDCCQ504Y2 493 aa17.49■□□□□ 0.39
CCDC28A-202ENST00000611852 GPRIN1Q7Z2K8 1008 aa17.49■□□□□ 0.39
CCDC28A-202ENST00000611852 RNF135Q8IUD6 432 aa17.49■□□□□ 0.39
CCDC28A-202ENST00000611852 FAM71AQ8IYT1 594 aa17.49■□□□□ 0.39
CCDC28A-202ENST00000611852 PCMTD1Q96MG8 357 aaPredicted RBP17.49■□□□□ 0.39
CCDC28A-202ENST00000611852 STK33Q9BYT3 514 aa17.49■□□□□ 0.39
CCDC28A-202ENST00000611852 OBSL1O75147 1896 aa17.49■□□□□ 0.39
CCDC28A-202ENST00000611852 DENND4CQ5VZ89 1909 aa17.49■□□□□ 0.39
CCDC28A-202ENST00000611852 MYO10Q9HD67 2058 aa17.49■□□□□ 0.39
CCDC28A-202ENST00000611852 BDP1A6H8Y1 2624 aa17.49■□□□□ 0.39
CCDC28A-202ENST00000611852 CYP26A1O43174 497 aa17.48■□□□□ 0.39
CCDC28A-202ENST00000611852 YWHAQP27348 245 aa17.48■□□□□ 0.39
CCDC28A-202ENST00000611852 GNA15P30679 374 aa17.48■□□□□ 0.39
CCDC28A-202ENST00000611852 CLCN1P35523 988 aa17.48■□□□□ 0.39
CCDC28A-202ENST00000611852 BCAT1P54687 386 aa17.48■□□□□ 0.39
CCDC28A-202ENST00000611852 POLR2FP61218 127 aaKnown RBP17.48■□□□□ 0.39
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms