RNA–Protein interactions for RNA: ENST00000596457.1

LIG1-211, Transcript of DNA ligase 1, humanhuman

TSL 5

Gene LIG1, Length 792 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-211ENST00000596457 FUKQ8N0W3 1084 aa11.76□□□□□ -0.53
LIG1-211ENST00000596457 TTC39CQ8N584 583 aa11.76□□□□□ -0.53
LIG1-211ENST00000596457 SLC4A11Q8NBS3 891 aa11.76□□□□□ -0.53
LIG1-211ENST00000596457 SMARCD1Q96GM5 515 aa11.76□□□□□ -0.53
LIG1-211ENST00000596457 PRRX2Q99811 253 aa11.76□□□□□ -0.53
LIG1-211ENST00000596457 RPP25Q9BUL9 199 aaKnown RBP11.76□□□□□ -0.53
LIG1-211ENST00000596457 TRPC7Q9HCX4 862 aa11.76□□□□□ -0.53
LIG1-211ENST00000596457 AVENQ9NQS1 362 aaPredicted RBP11.76□□□□□ -0.53
LIG1-211ENST00000596457 TMEM30AQ9NV96 361 aa11.76□□□□□ -0.53
LIG1-211ENST00000596457 SORCS3Q9UPU3 1222 aa11.76□□□□□ -0.53
LIG1-211ENST00000596457 ZFP37Q9Y6Q3 630 aaPredicted RBP11.76□□□□□ -0.53
LIG1-211ENST00000596457 NUMBLQ9Y6R0 609 aa11.76□□□□□ -0.53
LIG1-211ENST00000596457 DOCK8Q8NF50 2099 aa11.75□□□□□ -0.53
LIG1-211ENST00000596457 C5orf42Q9H799 3197 aa11.75□□□□□ -0.53
LIG1-211ENST00000596457 BEST1O76090 585 aa11.75□□□□□ -0.53
LIG1-211ENST00000596457 NOL4O94818 638 aa11.75□□□□□ -0.53
LIG1-211ENST00000596457 FAM200BP0CF97 657 aa11.75□□□□□ -0.53
LIG1-211ENST00000596457 KRT5P13647 590 aa11.75□□□□□ -0.53
LIG1-211ENST00000596457 EEF1GP26641 437 aaKnown RBP11.75□□□□□ -0.53
LIG1-211ENST00000596457 USP8P40818 1118 aa11.75□□□□□ -0.53
LIG1-211ENST00000596457 USP46P62068 366 aa11.75□□□□□ -0.53
LIG1-211ENST00000596457 MIIPQ5JXC2 388 aa11.75□□□□□ -0.53
LIG1-211ENST00000596457 MTSS1LQ765P7 747 aa11.75□□□□□ -0.53
LIG1-211ENST00000596457 NUP93Q8N1F7 819 aa11.75□□□□□ -0.53
LIG1-211ENST00000596457 MAB21L3Q8N8X9 362 aa11.75□□□□□ -0.53
LIG1-211ENST00000596457 TTC16Q8NEE8 873 aa11.75□□□□□ -0.53
LIG1-211ENST00000596457 ANKRD20A12PQ8NF67 263 aa11.75□□□□□ -0.53
LIG1-211ENST00000596457 ZSCAN18Q8TBC5 510 aaPredicted RBP11.75□□□□□ -0.53
LIG1-211ENST00000596457 FGF14Q92915 247 aa11.75□□□□□ -0.53
LIG1-211ENST00000596457 FAXDC2Q96IV6 333 aa11.75□□□□□ -0.53
LIG1-211ENST00000596457 SPATA17Q96L03 361 aa11.75□□□□□ -0.53
LIG1-211ENST00000596457 C8orf48Q96LL4 319 aa11.75□□□□□ -0.53
LIG1-211ENST00000596457 HNRNPABQ99729 332 aaKnown RBP11.75□□□□□ -0.53
LIG1-211ENST00000596457 SMOQ99835 787 aa11.75□□□□□ -0.53
LIG1-211ENST00000596457 IL21Q9HBE4 155 aa11.75□□□□□ -0.53
LIG1-211ENST00000596457 DMAP1Q9NPF5 467 aaPredicted RBP11.75□□□□□ -0.53
LIG1-211ENST00000596457 GDE1Q9NZC3 331 aa11.75□□□□□ -0.53
LIG1-211ENST00000596457 IGSF9Q9P2J2 1179 aa11.75□□□□□ -0.53
LIG1-211ENST00000596457 UXTQ9UBK9 157 aaPredicted RBP11.75□□□□□ -0.53
LIG1-211ENST00000596457 MYO16Q9Y6X6 1858 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 TMEM221A6NGB7 291 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 SMTNL1A8MU46 457 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 BECN2A8MW95 431 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 RNF225M0QZC1 329 aaPredicted RBP11.74□□□□□ -0.53
LIG1-211ENST00000596457 M0R296 226 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 DPYSL4O14531 572 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 NARSO43776 548 aaKnown RBP11.74□□□□□ -0.53
LIG1-211ENST00000596457 MICAL2O94851 1124 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 F11P03951 625 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 PON1P27169 355 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 VIPR2P41587 438 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 MFAP3P55082 362 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 TDGQ13569 410 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 HTR4Q13639 388 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 KRT31Q15323 416 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 NFKBIBQ15653 356 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 GOLGA7BQ2TAP0 167 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 SGO2Q562F6 1265 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 FAM78AQ5JUQ0 283 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 CDKAL1Q5VV42 579 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 TXNDC8Q6A555 127 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 TANGO2Q6ICL3 276 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 TRIM65Q6PJ69 517 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 SLC44A3Q8N4M1 653 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 RBBP8NLQ8NC74 664 aaPredicted RBP11.74□□□□□ -0.53
LIG1-211ENST00000596457 MRPS31Q92665 395 aaKnown RBP11.74□□□□□ -0.53
LIG1-211ENST00000596457 PBXIP1Q96AQ6 731 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 PCMTD1Q96MG8 357 aaPredicted RBP11.74□□□□□ -0.53
LIG1-211ENST00000596457 KREMEN1Q96MU8 473 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 PLA2G2FQ9BZM2 168 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 GPR88Q9GZN0 384 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 SMG9Q9H0W8 520 aaKnown RBP11.74□□□□□ -0.53
LIG1-211ENST00000596457 TASP1Q9H6P5 420 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 ZFP14Q9HCL3 533 aa11.74□□□□□ -0.53
LIG1-211ENST00000596457 ANHXE9PGG2 379 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 KRT37O76014 449 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 RTN3O95197 1032 aaPredicted RBP11.73□□□□□ -0.53
LIG1-211ENST00000596457 CFHP08603 1231 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 VDRP11473 427 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 ACO1P21399 889 aaKnown RBP11.73□□□□□ -0.53
LIG1-211ENST00000596457 YWHAQP27348 245 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 ZNF165P49910 485 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 NUBP1P53384 320 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 COPB1P53618 953 aaKnown RBP11.73□□□□□ -0.53
LIG1-211ENST00000596457 GCNT1Q02742 428 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 TAF10Q12962 218 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 GRM2Q14416 872 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 ZSCAN23Q3MJ62 389 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 CLEC20AQ6ZU45 233 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 HFE2Q6ZVN8 426 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 TMEM150AQ86TG1 271 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 ARID3BQ8IVW6 561 aaPredicted RBP11.73□□□□□ -0.53
LIG1-211ENST00000596457 SUGP1Q8IWZ8 645 aaKnown RBP11.73□□□□□ -0.53
LIG1-211ENST00000596457 UBR7Q8N806 425 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 ZMIZ2Q8NF64 920 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 SCAMP5Q8TAC9 235 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 UBA3Q8TBC4 463 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 NUP210Q8TEM1 1887 aaPredicted RBP11.73□□□□□ -0.53
LIG1-211ENST00000596457 SMARCD2Q92925 531 aa11.73□□□□□ -0.53
LIG1-211ENST00000596457 FBXO32Q969P5 355 aa11.73□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms