RNA–Protein interactions for RNA: ENST00000596332.1

LIG1-210, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-210ENST00000596332 HGSNATQ68CP4 663 aa11.2□□□□□ -0.62
LIG1-210ENST00000596332 PMF1Q6P1K2 205 aa11.2□□□□□ -0.62
LIG1-210ENST00000596332 CYP26C1Q6V0L0 522 aa11.2□□□□□ -0.62
LIG1-210ENST00000596332 NEK11Q8NG66 645 aa11.2□□□□□ -0.62
LIG1-210ENST00000596332 ITFG1Q8TB96 612 aa11.2□□□□□ -0.62
LIG1-210ENST00000596332 UBA3Q8TBC4 463 aa11.2□□□□□ -0.62
LIG1-210ENST00000596332 EPS8L1Q8TE68 723 aa11.2□□□□□ -0.62
LIG1-210ENST00000596332 SLC20A1Q8WUM9 679 aa11.2□□□□□ -0.62
LIG1-210ENST00000596332 SMG7Q92540 1137 aaKnown RBP11.2□□□□□ -0.62
LIG1-210ENST00000596332 SMARCD1Q96GM5 515 aa11.2□□□□□ -0.62
LIG1-210ENST00000596332 PCDHB18PQ96TA0 734 aa11.2□□□□□ -0.62
LIG1-210ENST00000596332 SEPT5Q99719 369 aaPredicted RBP11.2□□□□□ -0.62
LIG1-210ENST00000596332 EDEM3Q9BZQ6 932 aa11.2□□□□□ -0.62
LIG1-210ENST00000596332 UBXN6Q9BZV1 441 aa11.2□□□□□ -0.62
LIG1-210ENST00000596332 WDR6Q9NNW5 1121 aaKnown RBP11.2□□□□□ -0.62
LIG1-210ENST00000596332 KRT82Q9NSB4 513 aa11.2□□□□□ -0.62
LIG1-210ENST00000596332 AIPL1Q9NZN9 384 aa11.2□□□□□ -0.62
LIG1-210ENST00000596332 CAPN11Q9UMQ6 739 aa11.2□□□□□ -0.62
LIG1-210ENST00000596332 PCDHGC3Q9UN70 934 aa11.2□□□□□ -0.62
LIG1-210ENST00000596332 DAAM1Q9Y4D1 1078 aa11.2□□□□□ -0.62
LIG1-210ENST00000596332 USP3Q9Y6I4 520 aa11.2□□□□□ -0.62
LIG1-210ENST00000596332 LRRC53A6NM62 1247 aa11.19□□□□□ -0.62
LIG1-210ENST00000596332 GFPT2O94808 682 aa11.19□□□□□ -0.62
LIG1-210ENST00000596332 RHOP08100 348 aa11.19□□□□□ -0.62
LIG1-210ENST00000596332 KRT5P13647 590 aa11.19□□□□□ -0.62
LIG1-210ENST00000596332 IL9P15248 144 aa11.19□□□□□ -0.62
LIG1-210ENST00000596332 CD19P15391 556 aa11.19□□□□□ -0.62
LIG1-210ENST00000596332 NPR3P17342 541 aa11.19□□□□□ -0.62
LIG1-210ENST00000596332 PTPN2P17706 415 aa11.19□□□□□ -0.62
LIG1-210ENST00000596332 GNA15P30679 374 aa11.19□□□□□ -0.62
LIG1-210ENST00000596332 ELF1P32519 619 aa11.19□□□□□ -0.62
LIG1-210ENST00000596332 CDH5P33151 784 aaPredicted RBP11.19□□□□□ -0.62
LIG1-210ENST00000596332 GRIK1P39086 918 aa11.19□□□□□ -0.62
LIG1-210ENST00000596332 RPL10AP62906 217 aaKnown RBP11.19□□□□□ -0.62
LIG1-210ENST00000596332 SMAD4Q13485 552 aaKnown RBP11.19□□□□□ -0.62
LIG1-210ENST00000596332 SKIV2LQ15477 1246 aaKnown RBP11.19□□□□□ -0.62
LIG1-210ENST00000596332 GOLGA7BQ2TAP0 167 aa11.19□□□□□ -0.62
LIG1-210ENST00000596332 EP400NLQ6ZTU2 488 aa11.19□□□□□ -0.62
LIG1-210ENST00000596332 PIGZQ86VD9 579 aa11.19□□□□□ -0.62
LIG1-210ENST00000596332 SCN4BQ8IWT1 228 aa11.19□□□□□ -0.62
LIG1-210ENST00000596332 TRMT2BQ96GJ1 504 aaKnown RBP11.19□□□□□ -0.62
LIG1-210ENST00000596332 TJP2Q9UDY2 1190 aa11.19□□□□□ -0.62
LIG1-210ENST00000596332 DPP7Q9UHL4 492 aa11.19□□□□□ -0.62
LIG1-210ENST00000596332 MYO6Q9UM54 1294 aa11.19□□□□□ -0.62
LIG1-210ENST00000596332 ASB3Q9Y575 518 aa11.19□□□□□ -0.62
LIG1-210ENST00000596332 GREB1Q4ZG55 1949 aa11.19□□□□□ -0.62
LIG1-210ENST00000596332 CLSTN1O94985 981 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 LRG1P02750 347 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 MMEP08473 750 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 ZDHHC11BP0C7U3 371 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 FAM200BP0CF97 657 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 GJA1P17302 382 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 HNRNPH3P31942 346 aaKnown RBP11.18□□□□□ -0.62
LIG1-210ENST00000596332 CASP14P31944 242 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 USP8P40818 1118 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 PRKCIP41743 596 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 PLA2G4AP47712 749 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 ALDH1A3P47895 512 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 KIF11P52732 1056 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 FMO1Q01740 532 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 GOLGA8FQ08AF8 430 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 GOLGA8DPQ0D2H9 430 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 MEA1Q16626 185 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 STXBP5Q5T5C0 1151 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 PM20D1Q6GTS8 502 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 WDR59Q6PJI9 974 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 SCD5Q86SK9 330 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 SHKBP1Q8TBC3 707 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 KCTD13Q8WZ19 329 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 KHSRPQ92945 711 aaKnown RBP eCLIP11.18□□□□□ -0.62
LIG1-210ENST00000596332 SECISBP2LQ93073 1101 aaKnown RBP11.18□□□□□ -0.62
LIG1-210ENST00000596332 MRFAP1L1Q96HT8 127 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 CEP295NLQ96MC4 621 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 ZSWIM3Q96MP5 696 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 MYADMQ96S97 322 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 CORO1BQ9BR76 489 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 MED10Q9BTT4 135 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 SLC4A5Q9BY07 1137 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 LHX5Q9H2C1 402 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 PNPLA8Q9NP80 782 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 DMAP1Q9NPF5 467 aaPredicted RBP11.18□□□□□ -0.62
LIG1-210ENST00000596332 OSER1Q9NX31 292 aa11.18□□□□□ -0.62
LIG1-210ENST00000596332 DENND4AQ7Z401 1863 aa11.17□□□□□ -0.62
LIG1-210ENST00000596332 NCANO14594 1321 aa11.17□□□□□ -0.62
LIG1-210ENST00000596332 CLUHO75153 1309 aa11.17□□□□□ -0.62
LIG1-210ENST00000596332 C19orf67A6NJJ6 358 aa11.17□□□□□ -0.62
LIG1-210ENST00000596332 XPO1O14980 1071 aaKnown RBP11.17□□□□□ -0.62
LIG1-210ENST00000596332 TRIM66O15016 1216 aa11.17□□□□□ -0.62
LIG1-210ENST00000596332 THAP12O43422 761 aa11.17□□□□□ -0.62
LIG1-210ENST00000596332 CYP1A1P04798 512 aaPredicted RBP11.17□□□□□ -0.62
LIG1-210ENST00000596332 CSH1P0DML2 217 aa11.17□□□□□ -0.62
LIG1-210ENST00000596332 CSH2P0DML3 217 aa11.17□□□□□ -0.62
LIG1-210ENST00000596332 TRIM21P19474 475 aaKnown RBP11.17□□□□□ -0.62
LIG1-210ENST00000596332 STAT1P42224 750 aa11.17□□□□□ -0.62
LIG1-210ENST00000596332 SLC5A3P53794 718 aa11.17□□□□□ -0.62
LIG1-210ENST00000596332 EPHB3P54753 998 aa11.17□□□□□ -0.62
LIG1-210ENST00000596332 ZXDBP98169 803 aa11.17□□□□□ -0.62
LIG1-210ENST00000596332 PTK2Q05397 1052 aa11.17□□□□□ -0.62
LIG1-210ENST00000596332 BST2Q10589 180 aaKnown RBP11.17□□□□□ -0.62
LIG1-210ENST00000596332 PTP4A2Q12974 167 aa11.17□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms