RNA–Protein interactions for RNA: ENST00000593564.2

LSM4-202, Transcript of LSM4 homolog, U6 small nuclear RNA and mRNA degradation associated, humanhuman

TSL 2

Gene LSM4, Length 656 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM4-202ENST00000593564 SYT13Q7L8C5 426 aa25.54■■□□□ 1.68
LSM4-202ENST00000593564 RDH13Q8NBN7 331 aa25.54■■□□□ 1.68
LSM4-202ENST00000593564 RPLP0P6Q8NHW5 317 aa25.54■■□□□ 1.68
LSM4-202ENST00000593564 EZH1Q92800 747 aaPredicted RBP25.54■■□□□ 1.68
LSM4-202ENST00000593564 FNBP1Q96RU3 617 aa25.54■■□□□ 1.68
LSM4-202ENST00000593564 MRPL45Q9BRJ2 306 aaKnown RBP25.54■■□□□ 1.68
LSM4-202ENST00000593564 ARRDC1-AS1Q9H2J1 176 aa25.54■■□□□ 1.68
LSM4-202ENST00000593564 MAGEF1Q9HAY2 307 aa25.54■■□□□ 1.68
LSM4-202ENST00000593564 TRPM5Q9NZQ8 1165 aa25.54■■□□□ 1.68
LSM4-202ENST00000593564 ANAPC1Q9H1A4 1944 aa25.54■■□□□ 1.68
LSM4-202ENST00000593564 SPAG17Q6Q759 2223 aa25.53■■□□□ 1.68
LSM4-202ENST00000593564 ATG2BQ96BY7 2078 aa25.53■■□□□ 1.68
LSM4-202ENST00000593564 CST3P01034 146 aaPredicted RBP25.53■■□□□ 1.68
LSM4-202ENST00000593564 TNNI1P19237 187 aa25.53■■□□□ 1.68
LSM4-202ENST00000593564 GNL1P36915 607 aaPredicted RBP25.53■■□□□ 1.68
LSM4-202ENST00000593564 USP46P62068 366 aa25.53■■□□□ 1.68
LSM4-202ENST00000593564 NOP14P78316 857 aaKnown RBP25.53■■□□□ 1.68
LSM4-202ENST00000593564 CYP24A1Q07973 514 aa25.53■■□□□ 1.68
LSM4-202ENST00000593564 SCFD1Q8WVM8 642 aa25.53■■□□□ 1.68
LSM4-202ENST00000593564 ACDQ96AP0 544 aa25.53■■□□□ 1.68
LSM4-202ENST00000593564 ZC3H10Q96K80 434 aaKnown RBP25.53■■□□□ 1.68
LSM4-202ENST00000593564 C8orf48Q96LL4 319 aa25.53■■□□□ 1.68
LSM4-202ENST00000593564 HHIPQ96QV1 700 aa25.53■■□□□ 1.68
LSM4-202ENST00000593564 LINC00597Q9H2U6 94 aa25.53■■□□□ 1.68
LSM4-202ENST00000593564 SNX25Q9H3E2 840 aa25.53■■□□□ 1.68
LSM4-202ENST00000593564 GREB1Q4ZG55 1949 aa25.53■■□□□ 1.68
LSM4-202ENST00000593564 NFATC1O95644 943 aa25.52■■□□□ 1.68
LSM4-202ENST00000593564 ADRB1P08588 477 aa25.52■■□□□ 1.68
LSM4-202ENST00000593564 ZNF806P0C7X5 589 aa25.52■■□□□ 1.68
LSM4-202ENST00000593564 PPP3CCP48454 512 aa25.52■■□□□ 1.68
LSM4-202ENST00000593564 CYP2J2P51589 502 aa25.52■■□□□ 1.68
LSM4-202ENST00000593564 MDH1BQ5I0G3 518 aa25.52■■□□□ 1.68
LSM4-202ENST00000593564 PPM1JQ5JR12 505 aa25.52■■□□□ 1.68
LSM4-202ENST00000593564 UNC13DQ70J99 1090 aa25.52■■□□□ 1.68
LSM4-202ENST00000593564 KIAA1958Q8N8K9 716 aa25.52■■□□□ 1.68
LSM4-202ENST00000593564 XXYLT1Q8NBI6 393 aa25.52■■□□□ 1.68
LSM4-202ENST00000593564 CCDC26Q8TAB7 109 aa25.52■■□□□ 1.68
LSM4-202ENST00000593564 CCDC127Q96BQ5 260 aa25.52■■□□□ 1.68
LSM4-202ENST00000593564 CNTNAP3BQ96NU0 1288 aa25.52■■□□□ 1.68
LSM4-202ENST00000593564 CNTNAP3Q9BZ76 1288 aa25.52■■□□□ 1.68
LSM4-202ENST00000593564 NME7Q9Y5B8 376 aa25.52■■□□□ 1.68
LSM4-202ENST00000593564 PCDHGA5Q9Y5G8 931 aa25.52■■□□□ 1.68
LSM4-202ENST00000593564 ZNF840PA6NDX5 716 aa25.51■■□□□ 1.67
LSM4-202ENST00000593564 F8VP50 259 aa25.51■■□□□ 1.67
LSM4-202ENST00000593564 CLIC2O15247 247 aa25.51■■□□□ 1.67
LSM4-202ENST00000593564 APBB3O95704 486 aa25.51■■□□□ 1.67
LSM4-202ENST00000593564 STAU1O95793 577 aaKnown RBP25.51■■□□□ 1.67
LSM4-202ENST00000593564 LIMK1P53667 647 aa25.51■■□□□ 1.67
LSM4-202ENST00000593564 ZXDBP98169 803 aa25.51■■□□□ 1.67
LSM4-202ENST00000593564 AASDHQ4L235 1098 aaPredicted RBP25.51■■□□□ 1.67
LSM4-202ENST00000593564 HS2ST1Q7LGA3 356 aa25.51■■□□□ 1.67
LSM4-202ENST00000593564 NELFCDQ8IXH7 590 aa25.51■■□□□ 1.67
LSM4-202ENST00000593564 BACH2Q9BYV9 841 aa25.51■■□□□ 1.67
LSM4-202ENST00000593564 EBF1Q9UH73 591 aa25.51■■□□□ 1.67
LSM4-202ENST00000593564 PTPRDP23468 1912 aa25.51■■□□□ 1.67
LSM4-202ENST00000593564 LEFTY2O00292 366 aa25.5■■□□□ 1.67
LSM4-202ENST00000593564 TNNC1P63316 161 aa25.5■■□□□ 1.67
LSM4-202ENST00000593564 SLC7A9P82251 487 aa25.5■■□□□ 1.67
LSM4-202ENST00000593564 DMC1Q14565 340 aa25.5■■□□□ 1.67
LSM4-202ENST00000593564 SF3A2Q15428 464 aaKnown RBP25.5■■□□□ 1.67
LSM4-202ENST00000593564 BMT2Q1RMZ1 405 aa25.5■■□□□ 1.67
LSM4-202ENST00000593564 WDR72Q3MJ13 1102 aa25.5■■□□□ 1.67
LSM4-202ENST00000593564 C12orf50Q8NA57 414 aaPredicted RBP25.5■■□□□ 1.67
LSM4-202ENST00000593564 OR6B3Q8NGW1 331 aa25.5■■□□□ 1.67
LSM4-202ENST00000593564 DDX1Q92499 740 aaKnown RBP25.5■■□□□ 1.67
LSM4-202ENST00000593564 GZF1Q9H116 711 aaPredicted RBP25.5■■□□□ 1.67
LSM4-202ENST00000593564 CGNQ9P2M7 1197 aaKnown RBP25.5■■□□□ 1.67
LSM4-202ENST00000593564 CNOT1A5YKK6 2376 aaKnown RBP25.49■■□□□ 1.67
LSM4-202ENST00000593564 OLFM2O95897 454 aa25.49■■□□□ 1.67
LSM4-202ENST00000593564 PTPN1P18031 435 aaKnown RBP25.49■■□□□ 1.67
LSM4-202ENST00000593564 PSMD2Q13200 908 aa25.49■■□□□ 1.67
LSM4-202ENST00000593564 CCDC6Q16204 474 aa25.49■■□□□ 1.67
LSM4-202ENST00000593564 PLK5Q496M5 336 aa25.49■■□□□ 1.67
LSM4-202ENST00000593564 PLA2G2CQ5R387 149 aa25.49■■□□□ 1.67
LSM4-202ENST00000593564 C12orf56Q8IXR9 622 aa25.49■■□□□ 1.67
LSM4-202ENST00000593564 ELOVL4Q9GZR5 314 aa25.49■■□□□ 1.67
LSM4-202ENST00000593564 CACNA1BQ00975 2339 aa25.48■■□□□ 1.67
LSM4-202ENST00000593564 HELZP42694 1942 aaKnown RBP25.48■■□□□ 1.67
LSM4-202ENST00000593564 POLR2DO15514 142 aaKnown RBP25.48■■□□□ 1.67
LSM4-202ENST00000593564 ATICP31939 592 aa25.48■■□□□ 1.67
LSM4-202ENST00000593564 OPRD1P41143 372 aa25.48■■□□□ 1.67
LSM4-202ENST00000593564 TRPC3Q13507 836 aa25.48■■□□□ 1.67
LSM4-202ENST00000593564 ZNF516Q92618 1163 aa25.48■■□□□ 1.67
LSM4-202ENST00000593564 RNF38Q9H0F5 515 aa25.48■■□□□ 1.67
LSM4-202ENST00000593564 XYLT2Q9H1B5 865 aa25.48■■□□□ 1.67
LSM4-202ENST00000593564 DPEP3Q9H4B8 488 aa25.48■■□□□ 1.67
LSM4-202ENST00000593564 TMEM30AQ9NV96 361 aa25.48■■□□□ 1.67
LSM4-202ENST00000593564 PVALEFA0A1B0GWK0 134 aa25.47■■□□□ 1.67
LSM4-202ENST00000593564 OAS1P00973 400 aaKnown RBP25.47■■□□□ 1.67
LSM4-202ENST00000593564 CASP1P29466 404 aa25.47■■□□□ 1.67
LSM4-202ENST00000593564 MPLP40238 635 aa25.47■■□□□ 1.67
LSM4-202ENST00000593564 CACNA2D1P54289 1103 aa25.47■■□□□ 1.67
LSM4-202ENST00000593564 TAF10Q12962 218 aa25.47■■□□□ 1.67
LSM4-202ENST00000593564 GAB4Q2WGN9 574 aa25.47■■□□□ 1.67
LSM4-202ENST00000593564 TDRD10Q5VZ19 366 aaKnown RBP25.47■■□□□ 1.67
LSM4-202ENST00000593564 IL31Q6EBC2 164 aa25.47■■□□□ 1.67
LSM4-202ENST00000593564 B3GALNT2Q8NCR0 500 aa25.47■■□□□ 1.67
LSM4-202ENST00000593564 USP33Q8TEY7 942 aa25.47■■□□□ 1.67
LSM4-202ENST00000593564 SYAP1Q96A49 352 aaPredicted RBP25.47■■□□□ 1.67
LSM4-202ENST00000593564 ZNF518BQ9C0D4 1074 aa25.47■■□□□ 1.67
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms