RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 TOP6BLQ8N6T0 577 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 BHMTQ93088 406 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 NTPCRQ9BSD7 190 aaKnown RBP10.28□□□□□ -0.76
LIG3-216ENST00000593099 FUCA2Q9BTY2 467 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 TLE6Q9H808 572 aa10.28□□□□□ -0.76
LIG3-216ENST00000593099 MYH13Q9UKX3 1938 aa10.27□□□□□ -0.76
LIG3-216ENST00000593099 MICAL2O94851 1124 aa10.27□□□□□ -0.76
LIG3-216ENST00000593099 CSH1P0DML2 217 aa10.27□□□□□ -0.76
LIG3-216ENST00000593099 CSH2P0DML3 217 aa10.27□□□□□ -0.76
LIG3-216ENST00000593099 ARHGAP25P42331 645 aa10.27□□□□□ -0.76
LIG3-216ENST00000593099 ARL4CP56559 192 aa10.27□□□□□ -0.76
LIG3-216ENST00000593099 C9orf57Q5W0N0 161 aa10.27□□□□□ -0.76
LIG3-216ENST00000593099 RAD9BQ6WBX8 426 aa10.27□□□□□ -0.76
LIG3-216ENST00000593099 ELMO3Q96BJ8 720 aa10.27□□□□□ -0.76
LIG3-216ENST00000593099 PDLIM2Q96JY6 352 aa10.27□□□□□ -0.76
LIG3-216ENST00000593099 SCYL1Q96KG9 808 aa10.27□□□□□ -0.76
LIG3-216ENST00000593099 EIF2AQ9BY44 585 aaKnown RBP10.27□□□□□ -0.76
LIG3-216ENST00000593099 TMEM51Q9NW97 253 aa10.27□□□□□ -0.76
LIG3-216ENST00000593099 CCDC160A6NGH7 325 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 POC1B-GALNT4F8VUJ3 575 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 GLUD1P00367 558 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 PFKMP08237 780 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 CKBP12277 381 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 CYBAP13498 195 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 RRM1P23921 792 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 YWHAZP63104 245 aaKnown RBP10.27□□□□□ -0.77
LIG3-216ENST00000593099 ADCY1Q08828 1119 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 CLEC16AQ2KHT3 1053 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 LRRC23Q53EV4 343 aaPredicted RBP10.27□□□□□ -0.77
LIG3-216ENST00000593099 DENND5BQ6ZUT9 1274 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 DDI1Q8WTU0 396 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 PYROXD1Q8WU10 500 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 RSPH1Q8WYR4 309 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 C18orf25Q96B23 403 aaPredicted RBP10.27□□□□□ -0.77
LIG3-216ENST00000593099 THAP2Q9H0W7 228 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 FAM50BQ9Y247 325 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 OR1D2P34982 312 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 NDUFV1P49821 464 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 SMARCB1Q12824 385 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 TRIM32Q13049 653 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 TSTA3Q13630 321 aaPredicted RBP10.27□□□□□ -0.77
LIG3-216ENST00000593099 ZNF268Q14587 947 aaPredicted RBP10.27□□□□□ -0.77
LIG3-216ENST00000593099 MYRIPQ8NFW9 859 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 PPP4R1Q8TF05 950 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 SLC20A1Q8WUM9 679 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 RXFP2Q8WXD0 754 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 ASAH2Q9NR71 780 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 MRPS23Q9Y3D9 190 aaKnown RBP10.27□□□□□ -0.77
LIG3-216ENST00000593099 DNAJC25-GNG10A0A024R161 153 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 GRID2IPA4D2P6 1211 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 CFAP69A5D8W1 941 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 ARHGAP42A6NI28 874 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 PFDN1O60925 122 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 CCDC130P13994 396 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 ETFBP38117 255 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 PEX19P40855 299 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 CNGA2Q16280 664 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 C2CD6Q53TS8 623 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 PLPP4Q5VZY2 271 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 RAPH1Q70E73 1250 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 B3GALNT2Q8NCR0 500 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 RAB3IL1Q8TBN0 382 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 FAM172AQ8WUF8 416 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 OSBPL8Q9BZF1 889 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 SMPD4Q9NXE4 827 aa10.27□□□□□ -0.77
LIG3-216ENST00000593099 PAPPAQ13219 1627 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 MTSS1O43312 755 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 S100BP04271 92 aaPredicted RBP10.26□□□□□ -0.77
LIG3-216ENST00000593099 CYP3A5P20815 502 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 SPIRE1Q08AE8 756 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 CEP85LQ5SZL2 805 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 CPLX4Q7Z7G2 160 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 CCDC13Q8IYE1 715 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 PDZD8Q8NEN9 1154 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 VPS39Q96JC1 886 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 SERPINB11Q96P15 392 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 CHORDC1Q9UHD1 332 aaPredicted RBP10.26□□□□□ -0.77
LIG3-216ENST00000593099 SIPA1L3O60292 1781 aaPredicted RBP10.26□□□□□ -0.77
LIG3-216ENST00000593099 TPD52L2O43399 206 aaKnown RBP10.26□□□□□ -0.77
LIG3-216ENST00000593099 ATG7O95352 703 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 ASS1P00966 412 aaKnown RBP10.26□□□□□ -0.77
LIG3-216ENST00000593099 CCR1P32246 355 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 TBX4P57082 545 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 SLFN11Q7Z7L1 901 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 FAM131BQ86XD5 332 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 C1orf54Q8WWF1 131 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 EDEM1Q92611 657 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 EMID1Q96A84 441 aaPredicted RBP10.26□□□□□ -0.77
LIG3-216ENST00000593099 NUDCD1Q96RS6 583 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.26□□□□□ -0.77
LIG3-216ENST00000593099 AIPL1Q9NZN9 384 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 KIF1CO43896 1103 aaKnown RBP10.26□□□□□ -0.77
LIG3-216ENST00000593099 PLEKP08567 350 aaPredicted RBP10.26□□□□□ -0.77
LIG3-216ENST00000593099 NPR3P17342 541 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 MSH2P43246 934 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 GABPB1Q06547 395 aaPredicted RBP10.26□□□□□ -0.77
LIG3-216ENST00000593099 SFSWAPQ12872 951 aaKnown RBP10.26□□□□□ -0.77
LIG3-216ENST00000593099 MTFR1Q15390 333 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 SMTNL2Q2TAL5 461 aa10.26□□□□□ -0.77
LIG3-216ENST00000593099 ECHDC2Q86YB7 292 aa10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms