RNA–Protein interactions for RNA: ENST00000587470.1

VMP1-205, Transcript of vacuole membrane protein 1, humanhuman

TSL 2

Gene VMP1, Length 995 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VMP1-205ENST00000587470 WDR26Q9H7D7 661 aa5.33□□□□□ -1.56
VMP1-205ENST00000587470 TCF7L1Q9HCS4 588 aa5.33□□□□□ -1.56
VMP1-205ENST00000587470 PCDHA1Q9Y5I3 950 aa5.33□□□□□ -1.56
VMP1-205ENST00000587470 ANKRD30BQ9BXX2 1392 aa5.32□□□□□ -1.56
VMP1-205ENST00000587470 MSANTD3-TMEFF1A0A0A6YYJ0 341 aa5.32□□□□□ -1.56
VMP1-205ENST00000587470 WIPF3A6NGB9 483 aa5.32□□□□□ -1.56
VMP1-205ENST00000587470 CGB1A6NKQ9 187 aa5.32□□□□□ -1.56
VMP1-205ENST00000587470 M0QYG6 137 aa5.32□□□□□ -1.56
VMP1-205ENST00000587470 AHSGP02765 367 aa5.32□□□□□ -1.56
VMP1-205ENST00000587470 ABCG1P45844 678 aa5.32□□□□□ -1.56
VMP1-205ENST00000587470 CCT8P50990 548 aa5.32□□□□□ -1.56
VMP1-205ENST00000587470 EXOSC10Q01780 885 aaKnown RBP5.32□□□□□ -1.56
VMP1-205ENST00000587470 TBCCQ15814 346 aa5.32□□□□□ -1.56
VMP1-205ENST00000587470 PTPROQ16827 1216 aa5.32□□□□□ -1.56
VMP1-205ENST00000587470 CCDC157Q569K6 752 aa5.32□□□□□ -1.56
VMP1-205ENST00000587470 SFRP4Q6FHJ7 346 aaPredicted RBP5.32□□□□□ -1.56
VMP1-205ENST00000587470 CATIPQ7Z7H3 387 aa5.32□□□□□ -1.56
VMP1-205ENST00000587470 CAMKK1Q8N5S9 505 aa5.32□□□□□ -1.56
VMP1-205ENST00000587470 ATRIPQ8WXE1 791 aa5.32□□□□□ -1.56
VMP1-205ENST00000587470 MVB12AQ96EY5 273 aa5.32□□□□□ -1.56
VMP1-205ENST00000587470 NUP88Q99567 741 aaPredicted RBP5.32□□□□□ -1.56
VMP1-205ENST00000587470 GTPBP4Q9BZE4 634 aaKnown RBP5.32□□□□□ -1.56
VMP1-205ENST00000587470 SERTAD4Q9NUC0 356 aa5.32□□□□□ -1.56
VMP1-205ENST00000587470 DKK3Q9UBP4 350 aa5.32□□□□□ -1.56
VMP1-205ENST00000587470 ADAM21Q9UKJ8 722 aa5.32□□□□□ -1.56
VMP1-205ENST00000587470 PTCH1Q13635 1447 aa5.31□□□□□ -1.56
VMP1-205ENST00000587470 NINLQ9Y2I6 1382 aa5.31□□□□□ -1.56
VMP1-205ENST00000587470 PIK3C2BO00750 1634 aa5.31□□□□□ -1.56
VMP1-205ENST00000587470 MANSC4A6NHS7 340 aaPredicted RBP5.31□□□□□ -1.56
VMP1-205ENST00000587470 H3BUI4 141 aa5.31□□□□□ -1.56
VMP1-205ENST00000587470 NXPH3O95157 252 aa5.31□□□□□ -1.56
VMP1-205ENST00000587470 PRKCGP05129 697 aa5.31□□□□□ -1.56
VMP1-205ENST00000587470 IBSPP21815 317 aaPredicted RBP5.31□□□□□ -1.56
VMP1-205ENST00000587470 NKX6-1P78426 367 aaPredicted RBP5.31□□□□□ -1.56
VMP1-205ENST00000587470 TEDDM1Q5T9Z0 273 aa5.31□□□□□ -1.56
VMP1-205ENST00000587470 EMC10Q5UCC4 262 aa5.31□□□□□ -1.56
VMP1-205ENST00000587470 VPS53Q5VIR6 699 aa5.31□□□□□ -1.56
VMP1-205ENST00000587470 ZNF551Q7Z340 670 aaPredicted RBP5.31□□□□□ -1.56
VMP1-205ENST00000587470 FAM46DQ8NEK8 389 aa5.31□□□□□ -1.56
VMP1-205ENST00000587470 BRIX1Q8TDN6 353 aaKnown RBP5.31□□□□□ -1.56
VMP1-205ENST00000587470 PADI4Q9UM07 663 aa5.31□□□□□ -1.56
VMP1-205ENST00000587470 COL3A1P02461 1466 aaPredicted RBP5.31□□□□□ -1.56
VMP1-205ENST00000587470 SIPA1L2Q9P2F8 1722 aaPredicted RBP5.31□□□□□ -1.56
VMP1-205ENST00000587470 ZFYVE9O95405 1425 aa5.31□□□□□ -1.56
VMP1-205ENST00000587470 FAM163BP0C2L3 166 aa5.3□□□□□ -1.56
VMP1-205ENST00000587470 EBLN1P0CF75 366 aa5.3□□□□□ -1.56
VMP1-205ENST00000587470 PIM1P11309 404 aaPredicted RBP5.3□□□□□ -1.56
VMP1-205ENST00000587470 NDUFB7P17568 137 aa5.3□□□□□ -1.56
VMP1-205ENST00000587470 DRD4P21917 467 aa5.3□□□□□ -1.56
VMP1-205ENST00000587470 ALDH9A1P49189 494 aa5.3□□□□□ -1.56
VMP1-205ENST00000587470 BOP1Q14137 746 aaKnown RBP5.3□□□□□ -1.56
VMP1-205ENST00000587470 PLS1Q14651 629 aa5.3□□□□□ -1.56
VMP1-205ENST00000587470 AMOTQ4VCS5 1084 aa5.3□□□□□ -1.56
VMP1-205ENST00000587470 ZNF618Q5T7W0 954 aa5.3□□□□□ -1.56
VMP1-205ENST00000587470 ICE2Q659A1 982 aa5.3□□□□□ -1.56
VMP1-205ENST00000587470 SUMO4Q6EEV6 95 aa5.3□□□□□ -1.56
VMP1-205ENST00000587470 TMEM108Q6UXF1 575 aa5.3□□□□□ -1.56
VMP1-205ENST00000587470 KRT27Q7Z3Y8 459 aa5.3□□□□□ -1.56
VMP1-205ENST00000587470 DTX2Q86UW9 622 aa5.3□□□□□ -1.56
VMP1-205ENST00000587470 KLHDC4Q8TBB5 520 aa5.3□□□□□ -1.56
VMP1-205ENST00000587470 DPF1Q92782 380 aa5.3□□□□□ -1.56
VMP1-205ENST00000587470 SLC35A4Q96G79 324 aa5.3□□□□□ -1.56
VMP1-205ENST00000587470 CDK5RAP3Q96JB5 506 aa5.3□□□□□ -1.56
VMP1-205ENST00000587470 ARHGEF3Q9NR81 526 aa5.3□□□□□ -1.56
VMP1-205ENST00000587470 ANKRD6Q9Y2G4 727 aa5.3□□□□□ -1.56
VMP1-205ENST00000587470 SPATA31E1Q6ZUB1 1445 aa5.3□□□□□ -1.56
VMP1-205ENST00000587470 TMEM131LA2VDJ0 1609 aa5.3□□□□□ -1.56
VMP1-205ENST00000587470 TRPM2O94759 1503 aa5.29□□□□□ -1.56
VMP1-205ENST00000587470 CEP350Q5VT06 3117 aa5.29□□□□□ -1.56
VMP1-205ENST00000587470 RALGAPBQ86X10 1494 aa5.29□□□□□ -1.56
VMP1-205ENST00000587470 DNAJC9-AS1A6NH13 148 aa5.29□□□□□ -1.56
VMP1-205ENST00000587470 PPM1DO15297 605 aa5.29□□□□□ -1.56
VMP1-205ENST00000587470 TLR5O60602 858 aa5.29□□□□□ -1.56
VMP1-205ENST00000587470 HNRNPCP07910 306 aaKnown RBP eCLIP5.29□□□□□ -1.564e-19■■■□□ 18.9
VMP1-205ENST00000587470 ATXN1LP0C7T5 689 aaKnown RBP5.29□□□□□ -1.56
VMP1-205ENST00000587470 NEK2P51955 445 aa5.29□□□□□ -1.56
VMP1-205ENST00000587470 EXOSC9Q06265 439 aaKnown RBP5.29□□□□□ -1.56
VMP1-205ENST00000587470 LONRF3Q496Y0 759 aa5.29□□□□□ -1.56
VMP1-205ENST00000587470 LAYNQ6UX15 382 aa5.29□□□□□ -1.56
VMP1-205ENST00000587470 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.29□□□□□ -1.56
VMP1-205ENST00000587470 SEMA6DQ8NFY4 1073 aa5.29□□□□□ -1.56
VMP1-205ENST00000587470 HPS3Q969F9 1004 aa5.29□□□□□ -1.56
VMP1-205ENST00000587470 MAP3K14Q99558 947 aa5.29□□□□□ -1.56
VMP1-205ENST00000587470 PCGF6Q9BYE7 350 aa5.29□□□□□ -1.56
VMP1-205ENST00000587470 HESX1Q9UBX0 185 aa5.29□□□□□ -1.56
VMP1-205ENST00000587470 NOP58Q9Y2X3 529 aaKnown RBP5.29□□□□□ -1.56
VMP1-205ENST00000587470 CHD2O14647 1828 aaKnown RBP5.29□□□□□ -1.56
VMP1-205ENST00000587470 SPHKAPQ2M3C7 1700 aa5.28□□□□□ -1.56
VMP1-205ENST00000587470 ADGRB3O60242 1522 aa5.28□□□□□ -1.56
VMP1-205ENST00000587470 ASXL1Q8IXJ9 1541 aa5.28□□□□□ -1.56
VMP1-205ENST00000587470 CLTCL1P53675 1640 aa5.28□□□□□ -1.56
VMP1-205ENST00000587470 TARM1B6A8C7 271 aa5.28□□□□□ -1.56
VMP1-205ENST00000587470 DNAJB5O75953 348 aa5.28□□□□□ -1.56
VMP1-205ENST00000587470 CELA2AP08217 269 aa5.28□□□□□ -1.56
VMP1-205ENST00000587470 HDCP19113 662 aa5.28□□□□□ -1.56
VMP1-205ENST00000587470 ZNF134P52741 427 aa5.28□□□□□ -1.56
VMP1-205ENST00000587470 SOX8P57073 446 aa5.28□□□□□ -1.56
VMP1-205ENST00000587470 SLC10A2Q12908 348 aaPredicted RBP5.28□□□□□ -1.56
VMP1-205ENST00000587470 IQCB1Q15051 598 aa5.28□□□□□ -1.56
VMP1-205ENST00000587470 KHDC1LQ5JSQ8 128 aa5.28□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 17.8 ms