RNA–Protein interactions for RNA: ENST00000585121.5

SS18-225, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,545 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-225ENST00000585121 NOP14P78316 857 aaKnown RBP13.16□□□□□ -0.3
SS18-225ENST00000585121 KRT39Q6A163 491 aa13.16□□□□□ -0.3
SS18-225ENST00000585121 ELOA2Q8IYF1 753 aaPredicted RBP13.16□□□□□ -0.3
SS18-225ENST00000585121 TTC16Q8NEE8 873 aa13.16□□□□□ -0.3
SS18-225ENST00000585121 TTC8Q8TAM2 541 aa13.16□□□□□ -0.3
SS18-225ENST00000585121 EXOC4Q96A65 974 aa13.16□□□□□ -0.3
SS18-225ENST00000585121 SLITRK1Q96PX8 696 aa13.16□□□□□ -0.3
SS18-225ENST00000585121 TTLL2Q9BWV7 592 aa13.16□□□□□ -0.3
SS18-225ENST00000585121 ZNF518BQ9C0D4 1074 aa13.16□□□□□ -0.3
SS18-225ENST00000585121 CYP3A43Q9HB55 503 aa13.16□□□□□ -0.3
SS18-225ENST00000585121 CCL26Q9Y258 94 aa13.16□□□□□ -0.3
SS18-225ENST00000585121 NME7Q9Y5B8 376 aa13.16□□□□□ -0.3
SS18-225ENST00000585121 PCDHA5Q9Y5H7 936 aa13.16□□□□□ -0.3
SS18-225ENST00000585121 CLDN5O00501 218 aa13.15□□□□□ -0.3
SS18-225ENST00000585121 PSMA7O14818 248 aa13.15□□□□□ -0.3
SS18-225ENST00000585121 TADA3O75528 432 aa13.15□□□□□ -0.3
SS18-225ENST00000585121 ABL1P00519 1130 aa13.15□□□□□ -0.3
SS18-225ENST00000585121 SOX9P48436 509 aa13.15□□□□□ -0.3
SS18-225ENST00000585121 FKBP3Q00688 224 aaKnown RBP13.15□□□□□ -0.3
SS18-225ENST00000585121 CSTF1Q05048 431 aaKnown RBP13.15□□□□□ -0.3
SS18-225ENST00000585121 PPP3CAQ08209 521 aa13.15□□□□□ -0.3
SS18-225ENST00000585121 PDGFRLQ15198 375 aa13.15□□□□□ -0.3
SS18-225ENST00000585121 ZNF528Q3MIS6 628 aa13.15□□□□□ -0.3
SS18-225ENST00000585121 C1orf220Q5T0J3 134 aa13.15□□□□□ -0.3
SS18-225ENST00000585121 SPOPLQ6IQ16 392 aa13.15□□□□□ -0.3
SS18-225ENST00000585121 ACOT1Q86TX2 421 aa13.15□□□□□ -0.3
SS18-225ENST00000585121 FAM35AQ86V20 835 aa13.15□□□□□ -0.3
SS18-225ENST00000585121 NUP93Q8N1F7 819 aa13.15□□□□□ -0.3
SS18-225ENST00000585121 ARL14EPQ8N8R7 260 aaPredicted RBP13.15□□□□□ -0.3
SS18-225ENST00000585121 SPATA20Q8TB22 786 aa13.15□□□□□ -0.3
SS18-225ENST00000585121 ELMO3Q96BJ8 720 aa13.15□□□□□ -0.3
SS18-225ENST00000585121 SMARCD1Q96GM5 515 aa13.15□□□□□ -0.3
SS18-225ENST00000585121 DMAP1Q9NPF5 467 aaPredicted RBP13.15□□□□□ -0.3
SS18-225ENST00000585121 UTP3Q9NQZ2 479 aaKnown RBP eCLIP13.15□□□□□ -0.32e-7■■■■■ 220.9
SS18-225ENST00000585121 GTSE1Q9NYZ3 720 aa13.15□□□□□ -0.3
SS18-225ENST00000585121 SLC16A3O15427 465 aaKnown RBP13.14□□□□□ -0.31
SS18-225ENST00000585121 AP1G2O75843 785 aa13.14□□□□□ -0.31
SS18-225ENST00000585121 YWHAQP27348 245 aa13.14□□□□□ -0.31
SS18-225ENST00000585121 CTHP32929 405 aa13.14□□□□□ -0.31
SS18-225ENST00000585121 ASPAP45381 313 aa13.14□□□□□ -0.31
SS18-225ENST00000585121 IFNAR2P48551 515 aa13.14□□□□□ -0.31
SS18-225ENST00000585121 MXI1P50539 228 aa13.14□□□□□ -0.31
SS18-225ENST00000585121 NDST1P52848 882 aa13.14□□□□□ -0.31
SS18-225ENST00000585121 USP46P62068 366 aa13.14□□□□□ -0.31
SS18-225ENST00000585121 LRRC63Q05C16 580 aa13.14□□□□□ -0.31
SS18-225ENST00000585121 TNK2Q07912 1038 aa13.14□□□□□ -0.31
SS18-225ENST00000585121 IFRD2Q12894 506 aaPredicted RBP13.14□□□□□ -0.31
SS18-225ENST00000585121 RUNX3Q13761 415 aa13.14□□□□□ -0.31
SS18-225ENST00000585121 WDR44Q5JSH3 913 aa13.14□□□□□ -0.31
SS18-225ENST00000585121 DGKKQ5KSL6 1271 aa13.14□□□□□ -0.31
SS18-225ENST00000585121 TCERG1LQ5VWI1 586 aa13.14□□□□□ -0.31
SS18-225ENST00000585121 CRYBG2Q8N1P7 616 aa13.14□□□□□ -0.31
SS18-225ENST00000585121 TTC39CQ8N584 583 aa13.14□□□□□ -0.31
SS18-225ENST00000585121 PDZD8Q8NEN9 1154 aa13.14□□□□□ -0.31
SS18-225ENST00000585121 TAS1R2Q8TE23 839 aa13.14□□□□□ -0.31
SS18-225ENST00000585121 EEF2KMTQ96G04 330 aa13.14□□□□□ -0.31
SS18-225ENST00000585121 CYP2S1Q96SQ9 504 aa13.14□□□□□ -0.31
SS18-225ENST00000585121 FAM83CQ9BQN1 747 aa13.14□□□□□ -0.31
SS18-225ENST00000585121 NT5C1AQ9BXI3 368 aa13.14□□□□□ -0.31
SS18-225ENST00000585121 NIF3L1Q9GZT8 377 aa13.14□□□□□ -0.31
SS18-225ENST00000585121 SDCBP2Q9H190 292 aa13.14□□□□□ -0.31
SS18-225ENST00000585121 CHRDQ9H2X0 955 aa13.14□□□□□ -0.31
SS18-225ENST00000585121 DUS2Q9NX74 493 aaKnown RBP13.14□□□□□ -0.31
SS18-225ENST00000585121 PTPRZ1P23471 2315 aaPredicted RBP13.14□□□□□ -0.31
SS18-225ENST00000585121 C2orf78A6NCI8 922 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 ZNF840PA6NDX5 716 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 SHISA7A6NL88 538 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 TAF10Q12962 218 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 MTAPQ13126 283 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 NR1H3Q13133 447 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 FZD5Q13467 585 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 MTF1Q14872 753 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 PON2Q15165 354 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 ADSSL1Q8N142 457 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 ZNF687Q8N1G0 1237 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 CPA6Q8N4T0 437 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 FBXL13Q8NEE6 735 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 SH3RF2Q8TEC5 729 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 ATRIPQ8WXE1 791 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 OVCA2Q8WZ82 227 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 ERCC4Q92889 916 aaPredicted RBP13.13□□□□□ -0.31
SS18-225ENST00000585121 FBXO32Q969P5 355 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 DHTKD1Q96HY7 919 aaPredicted RBP13.13□□□□□ -0.31
SS18-225ENST00000585121 FAXDC2Q96IV6 333 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 EBF3Q9H4W6 596 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 KRT82Q9NSB4 513 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 COMMD8Q9NX08 183 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 GCNT4Q9P109 453 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 ARHGAP26Q9UNA1 814 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 R4GN57 208 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 PRR23AA6NEV1 266 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 LMNAP02545 664 aaKnown RBP13.13□□□□□ -0.31
SS18-225ENST00000585121 CHRNB1P11230 501 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 CD58P19256 250 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 CCR3P51677 355 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 CACNA2D1P54289 1103 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 NRLP54845 237 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 GRSF1Q12849 480 aaKnown RBP eCLIP13.13□□□□□ -0.31
SS18-225ENST00000585121 ZNF77Q15935 545 aa13.13□□□□□ -0.31
SS18-225ENST00000585121 DCAF17Q5H9S7 520 aaPredicted RBP13.13□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms