RNA–Protein interactions for RNA: ENST00000580003.1

SS18-214, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 609 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-214ENST00000580003 CCP110O43303 1012 aa7.71□□□□□ -1.18
SS18-214ENST00000580003 RGS10O43665 173 aa7.71□□□□□ -1.18
SS18-214ENST00000580003 RASAL1O95294 804 aa7.71□□□□□ -1.18
SS18-214ENST00000580003 IGLV2-14P01704 120 aa7.71□□□□□ -1.18
SS18-214ENST00000580003 FAM163BP0C2L3 166 aa7.71□□□□□ -1.18
SS18-214ENST00000580003 WT1P19544 449 aaPredicted RBP7.71□□□□□ -1.18
SS18-214ENST00000580003 COBLL1Q53SF7 1204 aa7.71□□□□□ -1.18
SS18-214ENST00000580003 CACHD1Q5VU97 1274 aa7.71□□□□□ -1.18
SS18-214ENST00000580003 WDR53Q7Z5U6 358 aaPredicted RBP7.71□□□□□ -1.18
SS18-214ENST00000580003 YAF2Q8IY57 180 aa7.71□□□□□ -1.18
SS18-214ENST00000580003 ABRAQ8N0Z2 381 aa7.71□□□□□ -1.18
SS18-214ENST00000580003 KRT78Q8N1N4 520 aa7.71□□□□□ -1.18
SS18-214ENST00000580003 SMCR8Q8TEV9 937 aaPredicted RBP7.71□□□□□ -1.18
SS18-214ENST00000580003 XAGE5Q8WWM1 108 aa7.71□□□□□ -1.18
SS18-214ENST00000580003 MSLNLQ96KJ4 702 aa7.71□□□□□ -1.18
SS18-214ENST00000580003 STRBPQ96SI9 672 aaKnown RBP7.71□□□□□ -1.18
SS18-214ENST00000580003 R3HDMLQ9H3Y0 253 aa7.71□□□□□ -1.18
SS18-214ENST00000580003 PRDM13Q9H4Q3 707 aa7.71□□□□□ -1.18
SS18-214ENST00000580003 FAM50BQ9Y247 325 aa7.71□□□□□ -1.18
SS18-214ENST00000580003 CDY1Q9Y6F8 540 aa7.71□□□□□ -1.18
SS18-214ENST00000580003 RHPN2P1A8MT19 583 aa7.7□□□□□ -1.18
SS18-214ENST00000580003 HMGB1P09429 215 aaKnown RBP7.7□□□□□ -1.18
SS18-214ENST00000580003 PRKAR1BP31321 381 aa7.7□□□□□ -1.18
SS18-214ENST00000580003 ARHGEF7Q14155 803 aa7.7□□□□□ -1.18
SS18-214ENST00000580003 SLC29A2Q14542 456 aa7.7□□□□□ -1.18
SS18-214ENST00000580003 CERCAMQ5T4B2 595 aa7.7□□□□□ -1.18
SS18-214ENST00000580003 ANKRD16Q6P6B7 361 aa7.7□□□□□ -1.18
SS18-214ENST00000580003 IZUMO1Q8IYV9 350 aa7.7□□□□□ -1.18
SS18-214ENST00000580003 FAM98AQ8NCA5 519 aaKnown RBP7.7□□□□□ -1.18
SS18-214ENST00000580003 TMEM171Q8WVE6 324 aa7.7□□□□□ -1.18
SS18-214ENST00000580003 PHKBQ93100 1093 aa7.7□□□□□ -1.18
SS18-214ENST00000580003 SARGQ9BW04 601 aa7.7□□□□□ -1.18
SS18-214ENST00000580003 UNKQ9C0B0 810 aaKnown RBP7.7□□□□□ -1.18
SS18-214ENST00000580003 GBA2Q9HCG7 927 aaPredicted RBP7.7□□□□□ -1.18
SS18-214ENST00000580003 COX11Q9Y6N1 276 aa7.7□□□□□ -1.18
SS18-214ENST00000580003 H7C4K7 107 aa7.69□□□□□ -1.18
SS18-214ENST00000580003 INMTO95050 263 aa7.69□□□□□ -1.18
SS18-214ENST00000580003 TXNP10599 105 aaKnown RBP7.69□□□□□ -1.18
SS18-214ENST00000580003 JUPP14923 745 aa7.69□□□□□ -1.18
SS18-214ENST00000580003 DRD4P21917 467 aa7.69□□□□□ -1.18
SS18-214ENST00000580003 PCSK6P29122 969 aa7.69□□□□□ -1.18
SS18-214ENST00000580003 CYP2C18P33260 490 aa7.69□□□□□ -1.18
SS18-214ENST00000580003 PTDSS1P48651 473 aaKnown RBP7.69□□□□□ -1.18
SS18-214ENST00000580003 TPTEP56180 551 aa7.69□□□□□ -1.18
SS18-214ENST00000580003 CCNIQ14094 377 aa7.69□□□□□ -1.18
SS18-214ENST00000580003 PTCHD3Q3KNS1 767 aa7.69□□□□□ -1.18
SS18-214ENST00000580003 PARS2Q7L3T8 475 aaKnown RBP7.69□□□□□ -1.18
SS18-214ENST00000580003 SDR16C5Q8N3Y7 309 aa7.69□□□□□ -1.18
SS18-214ENST00000580003 DNAJB14Q8TBM8 379 aa7.69□□□□□ -1.18
SS18-214ENST00000580003 SOCS4Q8WXH5 440 aa7.69□□□□□ -1.18
SS18-214ENST00000580003 SARAFQ96BY9 339 aa7.69□□□□□ -1.18
SS18-214ENST00000580003 BBC3Q96PG8 261 aaPredicted RBP7.69□□□□□ -1.18
SS18-214ENST00000580003 DPCDQ9BVM2 203 aaPredicted RBP7.69□□□□□ -1.18
SS18-214ENST00000580003 CHST8Q9H2A9 424 aa7.69□□□□□ -1.18
SS18-214ENST00000580003 DHX36Q9H2U1 1008 aaKnown RBP7.69□□□□□ -1.18
SS18-214ENST00000580003 PNPLA8Q9NP80 782 aa7.69□□□□□ -1.18
SS18-214ENST00000580003 PTGFRNQ9P2B2 879 aa7.69□□□□□ -1.18
SS18-214ENST00000580003 ARPP21Q9UBL0 812 aaPredicted RBP7.69□□□□□ -1.18
SS18-214ENST00000580003 CORO2BQ9UQ03 480 aa7.69□□□□□ -1.18
SS18-214ENST00000580003 SNX14Q9Y5W7 946 aa7.69□□□□□ -1.18
SS18-214ENST00000580003 WNT6Q9Y6F9 365 aa7.69□□□□□ -1.18
SS18-214ENST00000580003 POLR2AP24928 1970 aaKnown RBP7.69□□□□□ -1.18
SS18-214ENST00000580003 RAB27BO00194 218 aa7.68□□□□□ -1.18
SS18-214ENST00000580003 SRGAP2O75044 1071 aa7.68□□□□□ -1.18
SS18-214ENST00000580003 C1RP00736 705 aa7.68□□□□□ -1.18
SS18-214ENST00000580003 ERBB2P04626 1255 aa7.68□□□□□ -1.18
SS18-214ENST00000580003 ACVR2AP27037 513 aa7.68□□□□□ -1.18
SS18-214ENST00000580003 CARSP49589 748 aaKnown RBP7.68□□□□□ -1.18
SS18-214ENST00000580003 EEFSECP57772 596 aaKnown RBP7.68□□□□□ -1.18
SS18-214ENST00000580003 SAFBQ15424 915 aaKnown RBP eCLIP7.68□□□□□ -1.18
SS18-214ENST00000580003 AARS2Q5JTZ9 985 aaKnown RBP7.68□□□□□ -1.18
SS18-214ENST00000580003 UNC13DQ70J99 1090 aa7.68□□□□□ -1.18
SS18-214ENST00000580003 ZNF804AQ7Z570 1209 aa7.68□□□□□ -1.18
SS18-214ENST00000580003 RP9Q8TA86 221 aaKnown RBP7.68□□□□□ -1.18
SS18-214ENST00000580003 ZNF384Q8TF68 577 aa7.68□□□□□ -1.18
SS18-214ENST00000580003 PCGF6Q9BYE7 350 aa7.68□□□□□ -1.18
SS18-214ENST00000580003 DLL3Q9NYJ7 618 aa7.68□□□□□ -1.18
SS18-214ENST00000580003 DNMT3BQ9UBC3 853 aaKnown RBP7.68□□□□□ -1.18
SS18-214ENST00000580003 MID2Q9UJV3 735 aa7.68□□□□□ -1.18
SS18-214ENST00000580003 COL11A2P13942 1736 aaPredicted RBP7.67□□□□□ -1.18
SS18-214ENST00000580003 CAND2O75155 1236 aa7.67□□□□□ -1.18
SS18-214ENST00000580003 PROP1O75360 226 aa7.67□□□□□ -1.18
SS18-214ENST00000580003 PRKCBP05771 671 aa7.67□□□□□ -1.18
SS18-214ENST00000580003 DLDP09622 509 aaKnown RBP7.67□□□□□ -1.18
SS18-214ENST00000580003 TRIM27P14373 513 aa7.67□□□□□ -1.18
SS18-214ENST00000580003 TPH1P17752 444 aa7.67□□□□□ -1.18
SS18-214ENST00000580003 ENGP17813 658 aa7.67□□□□□ -1.18
SS18-214ENST00000580003 ITPKBP27987 946 aa7.67□□□□□ -1.18
SS18-214ENST00000580003 CPT1AP50416 773 aa7.67□□□□□ -1.18
SS18-214ENST00000580003 ITGA8P53708 1063 aa7.67□□□□□ -1.18
SS18-214ENST00000580003 LY6KQ17RY6 165 aa7.67□□□□□ -1.18
SS18-214ENST00000580003 SLC29A4Q7RTT9 530 aa7.67□□□□□ -1.18
SS18-214ENST00000580003 AMIGO2Q86SJ2 522 aa7.67□□□□□ -1.18
SS18-214ENST00000580003 CAND1Q86VP6 1230 aaKnown RBP7.67□□□□□ -1.18
SS18-214ENST00000580003 TBC1D5Q92609 795 aa7.67□□□□□ -1.18
SS18-214ENST00000580003 SNX22Q96L94 193 aa7.67□□□□□ -1.18
SS18-214ENST00000580003 C17orf80Q9BSJ5 609 aa7.67□□□□□ -1.18
SS18-214ENST00000580003 BRIP1Q9BX63 1249 aa7.67□□□□□ -1.18
SS18-214ENST00000580003 ZNF212Q9UDV6 495 aa7.67□□□□□ -1.18
SS18-214ENST00000580003 RGS17Q9UGC6 210 aaPredicted RBP7.67□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms