RNA–Protein interactions for RNA: ENST00000579640.5

SS18-213, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2

Gene SS18, Length 1,840 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-213ENST00000579640 CEP295NLQ96MC4 621 aa11.34□□□□□ -0.59
SS18-213ENST00000579640 SMOQ99835 787 aa11.34□□□□□ -0.59
SS18-213ENST00000579640 C11orf70Q9BRQ4 267 aa11.34□□□□□ -0.59
SS18-213ENST00000579640 SYNCQ9H7C4 482 aa11.34□□□□□ -0.59
SS18-213ENST00000579640 AVENQ9NQS1 362 aaPredicted RBP11.34□□□□□ -0.59
SS18-213ENST00000579640 ABI2Q9NYB9 513 aaPredicted RBP11.34□□□□□ -0.59
SS18-213ENST00000579640 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.34□□□□□ -0.59
SS18-213ENST00000579640 CYTH4Q9UIA0 394 aa11.34□□□□□ -0.59
SS18-213ENST00000579640 MYH10P35580 1976 aa11.33□□□□□ -0.6
SS18-213ENST00000579640 A0A0A6YYK5 440 aaPredicted RBP11.33□□□□□ -0.6
SS18-213ENST00000579640 ZC3H11BA0A1B0GUI2 810 aaPredicted RBP11.33□□□□□ -0.6
SS18-213ENST00000579640 GRM6O15303 877 aa11.33□□□□□ -0.6
SS18-213ENST00000579640 TEX28O15482 410 aa11.33□□□□□ -0.6
SS18-213ENST00000579640 ADAM12O43184 909 aa11.33□□□□□ -0.6
SS18-213ENST00000579640 ADH1AP07327 375 aa11.33□□□□□ -0.6
SS18-213ENST00000579640 RPL17P18621 184 aaKnown RBP11.33□□□□□ -0.6
SS18-213ENST00000579640 ABCB4P21439 1286 aa11.33□□□□□ -0.6
SS18-213ENST00000579640 MSNP26038 577 aaKnown RBP11.33□□□□□ -0.6
SS18-213ENST00000579640 CA8P35219 290 aa11.33□□□□□ -0.6
SS18-213ENST00000579640 TUFMP49411 452 aaKnown RBP11.33□□□□□ -0.6
SS18-213ENST00000579640 MAP3K7CLP57077 242 aa11.33□□□□□ -0.6
SS18-213ENST00000579640 ERVFC1P60507 584 aa11.33□□□□□ -0.6
SS18-213ENST00000579640 PTP4A2Q12974 167 aa11.33□□□□□ -0.6
SS18-213ENST00000579640 ARHGAP29Q52LW3 1261 aa11.33□□□□□ -0.6
SS18-213ENST00000579640 PRPF38BQ5VTL8 546 aaKnown RBP11.33□□□□□ -0.6
SS18-213ENST00000579640 PMF1Q6P1K2 205 aa11.33□□□□□ -0.6
SS18-213ENST00000579640 RNF19BQ6ZMZ0 732 aa11.33□□□□□ -0.6
SS18-213ENST00000579640 MMS22LQ6ZRQ5 1243 aa11.33□□□□□ -0.6
SS18-213ENST00000579640 SPRED2Q7Z698 418 aa11.33□□□□□ -0.6
SS18-213ENST00000579640 PIGZQ86VD9 579 aa11.33□□□□□ -0.6
SS18-213ENST00000579640 ZDHHC17Q8IUH5 632 aa11.33□□□□□ -0.6
SS18-213ENST00000579640 RHOT2Q8IXI1 618 aa11.33□□□□□ -0.6
SS18-213ENST00000579640 MRPL43Q8N983 215 aaKnown RBP11.33□□□□□ -0.6
SS18-213ENST00000579640 AUTS2Q8WXX7 1259 aa11.33□□□□□ -0.6
SS18-213ENST00000579640 ZNF653Q96CK0 615 aa11.33□□□□□ -0.6
SS18-213ENST00000579640 CALR3Q96L12 384 aaKnown RBP11.33□□□□□ -0.6
SS18-213ENST00000579640 C8orf48Q96LL4 319 aa11.33□□□□□ -0.6
SS18-213ENST00000579640 CPXM1Q96SM3 734 aa11.33□□□□□ -0.6
SS18-213ENST00000579640 PACSIN1Q9BY11 444 aa11.33□□□□□ -0.6
SS18-213ENST00000579640 ST7Q9NRC1 585 aa11.33□□□□□ -0.6
SS18-213ENST00000579640 NCANO14594 1321 aa11.33□□□□□ -0.6
SS18-213ENST00000579640 C2orf71A6NGG8 1288 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 CYP1A2P05177 515 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 CNPP09543 421 aaKnown RBP11.32□□□□□ -0.6
SS18-213ENST00000579640 HAPLN1P10915 354 aaPredicted RBP11.32□□□□□ -0.6
SS18-213ENST00000579640 ATF2P15336 505 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 CYP2F1P24903 491 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 DNAJB1P25685 340 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 GRIK1P39086 918 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 RPL10AP62906 217 aaKnown RBP11.32□□□□□ -0.6
SS18-213ENST00000579640 ADCY1Q08828 1119 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 ZNF268Q14587 947 aaPredicted RBP11.32□□□□□ -0.6
SS18-213ENST00000579640 TCEAL1Q15170 157 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 LRIT3Q3SXY7 679 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 PLPP4Q5VZY2 271 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 REXO1L1PQ8IX06 675 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 ATAD1Q8NBU5 361 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 ZMIZ2Q8NF64 920 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 MICAL1Q8TDZ2 1067 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 RFFLQ8WZ73 363 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 PGLYRP2Q96PD5 576 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 KLHL5Q96PQ7 755 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 THAP2Q9H0W7 228 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 LRRC4Q9HBW1 653 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 CNOT8Q9UFF9 292 aaKnown RBP11.32□□□□□ -0.6
SS18-213ENST00000579640 SCINQ9Y6U3 715 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 F8VP50 259 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 TULP2O00295 520 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 BEST1O76090 585 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 FBXO21O94952 628 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 VNN2O95498 520 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 ELF1P32519 619 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 SCNN1AP37088 669 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 RGS7P49802 495 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 MGAT5BQ3V5L5 792 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 RAB41Q5JT25 222 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 SCN4BQ8IWT1 228 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 RNF10Q8N5U6 811 aaKnown RBP11.32□□□□□ -0.6
SS18-213ENST00000579640 C3orf20Q8ND61 904 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 ARNTL2Q8WYA1 636 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 SPATA17Q96L03 361 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 RHOBTB2Q9BYZ6 727 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 LACRTQ9GZZ8 138 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 MRPL47Q9HD33 250 aaKnown RBP11.32□□□□□ -0.6
SS18-213ENST00000579640 PARVAQ9NVD7 372 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 TRMT1Q9NXH9 659 aaKnown RBP11.32□□□□□ -0.6
SS18-213ENST00000579640 UVRAGQ9P2Y5 699 aa11.32□□□□□ -0.6
SS18-213ENST00000579640 PATJQ8NI35 1801 aa11.31□□□□□ -0.6
SS18-213ENST00000579640 RCCD1A6NED2 376 aa11.31□□□□□ -0.6
SS18-213ENST00000579640 HHLA1C9JL84 531 aa11.31□□□□□ -0.6
SS18-213ENST00000579640 E5RJQ4 531 aa11.31□□□□□ -0.6
SS18-213ENST00000579640 SART1O43290 800 aaKnown RBP11.31□□□□□ -0.6
SS18-213ENST00000579640 ERBB2P04626 1255 aa11.31□□□□□ -0.6
SS18-213ENST00000579640 RRM1P23921 792 aa11.31□□□□□ -0.6
SS18-213ENST00000579640 KLRC2P26717 231 aa11.31□□□□□ -0.6
SS18-213ENST00000579640 ARHGAP25P42331 645 aa11.31□□□□□ -0.6
SS18-213ENST00000579640 CACNA2D1P54289 1103 aa11.31□□□□□ -0.6
SS18-213ENST00000579640 DUSP4Q13115 394 aa11.31□□□□□ -0.6
SS18-213ENST00000579640 CAMK1Q14012 370 aa11.31□□□□□ -0.6
SS18-213ENST00000579640 IFI16Q16666 785 aaKnown RBP11.31□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms