RNA–Protein interactions for RNA: ENST00000571805.5

VPS53-211, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,356 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-211ENST00000571805 COPS5Q92905 334 aa23.86■■□□□ 1.41
VPS53-211ENST00000571805 TBC1D31Q96DN5 1066 aa23.86■■□□□ 1.41
VPS53-211ENST00000571805 THOC1Q96FV9 657 aaKnown RBP23.86■■□□□ 1.41
VPS53-211ENST00000571805 TMEM176AQ96HP8 235 aa23.86■■□□□ 1.41
VPS53-211ENST00000571805 NCAPGQ9BPX3 1015 aa23.86■■□□□ 1.41
VPS53-211ENST00000571805 MYLK2Q9H1R3 596 aa23.86■■□□□ 1.41
VPS53-211ENST00000571805 WDR3Q9UNX4 943 aaKnown RBP eCLIP23.86■■□□□ 1.41
VPS53-211ENST00000571805 ITGB3P05106 788 aa23.86■■□□□ 1.41
VPS53-211ENST00000571805 EIF3EP60228 445 aaKnown RBP23.86■■□□□ 1.41
VPS53-211ENST00000571805 JADE1Q6IE81 842 aa23.86■■□□□ 1.41
VPS53-211ENST00000571805 FAM71DQ8N9W8 422 aa23.86■■□□□ 1.41
VPS53-211ENST00000571805 PAFAH2Q99487 392 aa23.86■■□□□ 1.41
VPS53-211ENST00000571805 USP18Q9UMW8 372 aa23.86■■□□□ 1.41
VPS53-211ENST00000571805 CHKBQ9Y259 395 aa23.86■■□□□ 1.41
VPS53-211ENST00000571805 EPB41L3Q9Y2J2 1087 aaPredicted RBP23.86■■□□□ 1.41
VPS53-211ENST00000571805 USH1CQ9Y6N9 552 aa23.86■■□□□ 1.41
VPS53-211ENST00000571805 PAPPA2Q9BXP8 1791 aa23.85■■□□□ 1.41
VPS53-211ENST00000571805 PIAS1O75925 651 aa23.85■■□□□ 1.41
VPS53-211ENST00000571805 STAG3L1P0CL83 205 aa23.85■■□□□ 1.41
VPS53-211ENST00000571805 EZRP15311 586 aaKnown RBP23.85■■□□□ 1.41
VPS53-211ENST00000571805 HHATQ5VTY9 493 aa23.85■■□□□ 1.41
VPS53-211ENST00000571805 LVRNQ6Q4G3 990 aa23.85■■□□□ 1.41
VPS53-211ENST00000571805 HSPH1Q92598 858 aa23.85■■□□□ 1.41
VPS53-211ENST00000571805 SMARCAD1Q9H4L7 1026 aa23.85■■□□□ 1.41
VPS53-211ENST00000571805 IFT122Q9HBG6 1241 aa23.85■■□□□ 1.41
VPS53-211ENST00000571805 XPO7Q9UIA9 1087 aaKnown RBP23.85■■□□□ 1.41
VPS53-211ENST00000571805 OTOFQ9HC10 1997 aa23.85■■□□□ 1.41
VPS53-211ENST00000571805 RNF8O76064 485 aa23.85■■□□□ 1.41
VPS53-211ENST00000571805 ENDOD1O94919 500 aa23.85■■□□□ 1.41
VPS53-211ENST00000571805 SLC26A2P50443 739 aa23.85■■□□□ 1.41
VPS53-211ENST00000571805 IRX3P78415 501 aaPredicted RBP23.85■■□□□ 1.41
VPS53-211ENST00000571805 DPYSL3Q14195 570 aa23.85■■□□□ 1.41
VPS53-211ENST00000571805 DCAKDQ8WVC6 231 aa23.85■■□□□ 1.41
VPS53-211ENST00000571805 PEBP4Q96S96 227 aa23.85■■□□□ 1.41
VPS53-211ENST00000571805 TACO1Q9BSH4 297 aaKnown RBP23.85■■□□□ 1.41
VPS53-211ENST00000571805 ASCC2Q9H1I8 757 aaPredicted RBP23.85■■□□□ 1.41
VPS53-211ENST00000571805 A0A1B0GUA9 196 aa23.84■■□□□ 1.41
VPS53-211ENST00000571805 SMAPO00193 183 aa23.84■■□□□ 1.41
VPS53-211ENST00000571805 HBP1O60381 514 aa23.84■■□□□ 1.41
VPS53-211ENST00000571805 ZWINTO95229 277 aa23.84■■□□□ 1.41
VPS53-211ENST00000571805 RBP3P10745 1247 aa23.84■■□□□ 1.41
VPS53-211ENST00000571805 KLHL38Q2WGJ6 581 aa23.84■■□□□ 1.41
VPS53-211ENST00000571805 AGAP11Q8TF27 550 aa23.84■■□□□ 1.41
VPS53-211ENST00000571805 ZNF75CPQ92670 426 aaPredicted RBP23.84■■□□□ 1.41
VPS53-211ENST00000571805 MPHOSPH6Q99547 160 aaKnown RBP23.84■■□□□ 1.41
VPS53-211ENST00000571805 NFKBIZQ9BYH8 718 aa23.84■■□□□ 1.41
VPS53-211ENST00000571805 VRTNQ9H8Y1 702 aa23.84■■□□□ 1.41
VPS53-211ENST00000571805 CYLDQ9NQC7 956 aa23.84■■□□□ 1.41
VPS53-211ENST00000571805 MCM3APO60318 1980 aa23.84■■□□□ 1.41
VPS53-211ENST00000571805 IRF6O14896 467 aa23.84■■□□□ 1.41
VPS53-211ENST00000571805 PCK1P35558 622 aa23.84■■□□□ 1.41
VPS53-211ENST00000571805 MSH2P43246 934 aa23.84■■□□□ 1.41
VPS53-211ENST00000571805 NRLP54845 237 aa23.84■■□□□ 1.41
VPS53-211ENST00000571805 BBS9Q3SYG4 887 aa23.84■■□□□ 1.41
VPS53-211ENST00000571805 CYP4V2Q6ZWL3 525 aaPredicted RBP23.84■■□□□ 1.41
VPS53-211ENST00000571805 FBXO16Q8IX29 292 aaPredicted RBP23.84■■□□□ 1.41
VPS53-211ENST00000571805 ZNF276Q8N554 614 aa23.84■■□□□ 1.41
VPS53-211ENST00000571805 CALN1Q9BXU9 219 aa23.84■■□□□ 1.41
VPS53-211ENST00000571805 RSAD1Q9HA92 442 aa23.84■■□□□ 1.41
VPS53-211ENST00000571805 TXNRD2Q9NNW7 524 aa23.84■■□□□ 1.41
VPS53-211ENST00000571805 DNAJC25-GNG10A0A024R161 153 aa23.83■■□□□ 1.41
VPS53-211ENST00000571805 A0A0G2JLL6 359 aaPredicted RBP23.83■■□□□ 1.41
VPS53-211ENST00000571805 A8MUI8 341 aa23.83■■□□□ 1.41
VPS53-211ENST00000571805 M0QYV0 167 aa23.83■■□□□ 1.41
VPS53-211ENST00000571805 SLC25A27O95847 323 aa23.83■■□□□ 1.41
VPS53-211ENST00000571805 HMGCRP04035 888 aa23.83■■□□□ 1.41
VPS53-211ENST00000571805 ZNF143P52747 638 aaPredicted RBP23.83■■□□□ 1.41
VPS53-211ENST00000571805 MTM1Q13496 603 aa23.83■■□□□ 1.41
VPS53-211ENST00000571805 AMHR2Q16671 573 aa23.83■■□□□ 1.41
VPS53-211ENST00000571805 SH3PXD2AQ5TCZ1 1133 aa23.83■■□□□ 1.41
VPS53-211ENST00000571805 PRRT2Q7Z6L0 340 aaPredicted RBP23.83■■□□□ 1.41
VPS53-211ENST00000571805 PALM2Q8IXS6 379 aa23.83■■□□□ 1.41
VPS53-211ENST00000571805 PDIK1LQ8N165 341 aa23.83■■□□□ 1.41
VPS53-211ENST00000571805 SPATA18Q8TC71 538 aa23.83■■□□□ 1.41
VPS53-211ENST00000571805 C10orf82Q8WW14 230 aa23.83■■□□□ 1.41
VPS53-211ENST00000571805 RNPEPQ9H4A4 650 aa23.83■■□□□ 1.41
VPS53-211ENST00000571805 CYP3A43Q9HB55 503 aa23.83■■□□□ 1.41
VPS53-211ENST00000571805 PRMT7Q9NVM4 692 aaPredicted RBP23.83■■□□□ 1.41
VPS53-211ENST00000571805 ASNSD1Q9NWL6 643 aa23.83■■□□□ 1.41
VPS53-211ENST00000571805 CSADQ9Y600 493 aa23.83■■□□□ 1.41
VPS53-211ENST00000571805 MCF2LO15068 1137 aa23.83■■□□□ 1.4
VPS53-211ENST00000571805 CSDE1O75534 798 aaKnown RBP23.83■■□□□ 1.4
VPS53-211ENST00000571805 C22orf31O95567 290 aa23.83■■□□□ 1.4
VPS53-211ENST00000571805 TSHRP16473 764 aa23.83■■□□□ 1.4
VPS53-211ENST00000571805 ATICP31939 592 aa23.83■■□□□ 1.4
VPS53-211ENST00000571805 MMRN1Q13201 1228 aa23.83■■□□□ 1.4
VPS53-211ENST00000571805 Q3C1V9 767 aa23.83■■□□□ 1.4
VPS53-211ENST00000571805 TRNP1Q6NT89 227 aa23.83■■□□□ 1.4
VPS53-211ENST00000571805 RPAINQ86UA6 219 aa23.83■■□□□ 1.4
VPS53-211ENST00000571805 IGDCC3Q8IVU1 814 aa23.83■■□□□ 1.4
VPS53-211ENST00000571805 ERP27Q96DN0 273 aa23.83■■□□□ 1.4
VPS53-211ENST00000571805 ADPGKQ9BRR6 497 aa23.83■■□□□ 1.4
VPS53-211ENST00000571805 VDRP11473 427 aa23.82■■□□□ 1.4
VPS53-211ENST00000571805 SETDB1Q15047 1291 aa23.82■■□□□ 1.4
VPS53-211ENST00000571805 FAM187BQ17R55 369 aa23.82■■□□□ 1.4
VPS53-211ENST00000571805 RAB6CQ53S08 254 aa23.82■■□□□ 1.4
VPS53-211ENST00000571805 FAM102AQ5T9C2 384 aaPredicted RBP23.82■■□□□ 1.4
VPS53-211ENST00000571805 MAP1SQ66K74 1059 aaPredicted RBP23.82■■□□□ 1.4
VPS53-211ENST00000571805 NPNTQ6UXI9 565 aa23.82■■□□□ 1.4
VPS53-211ENST00000571805 OTOAQ7RTW8 1153 aa23.82■■□□□ 1.4
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms