RNA–Protein interactions for RNA: ENST00000570296.1

CLK3-227, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 916 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-227ENST00000570296 TMEM60Q9H2L4 133 aa19.47■□□□□ 0.71
CLK3-227ENST00000570296 PRDM16Q9HAZ2 1276 aa19.47■□□□□ 0.71
CLK3-227ENST00000570296 ARHGEF4Q9NR80 690 aa19.47■□□□□ 0.71
CLK3-227ENST00000570296 PCDHGB2Q9Y5G2 931 aa19.47■□□□□ 0.71
CLK3-227ENST00000570296 FAM149AA5PLN7 773 aa19.46■□□□□ 0.71
CLK3-227ENST00000570296 LACTBL1A8MY62 500 aa19.46■□□□□ 0.71
CLK3-227ENST00000570296 WNT7AO00755 349 aa19.46■□□□□ 0.71
CLK3-227ENST00000570296 FLRT2O43155 660 aa19.46■□□□□ 0.71
CLK3-227ENST00000570296 RRP8O43159 456 aaKnown RBP19.46■□□□□ 0.71
CLK3-227ENST00000570296 PRPF40AO75400 957 aaKnown RBP19.46■□□□□ 0.71
CLK3-227ENST00000570296 CER1O95813 267 aa19.46■□□□□ 0.71
CLK3-227ENST00000570296 RPL10AP62906 217 aaKnown RBP19.46■□□□□ 0.71
CLK3-227ENST00000570296 RESTQ13127 1097 aa19.46■□□□□ 0.71
CLK3-227ENST00000570296 DHCR24Q15392 516 aa19.46■□□□□ 0.71
CLK3-227ENST00000570296 KYAT1Q16773 422 aa19.46■□□□□ 0.71
CLK3-227ENST00000570296 BMP2KLQ5H9B9 411 aa19.46■□□□□ 0.71
CLK3-227ENST00000570296 C9orf57Q5W0N0 161 aa19.46■□□□□ 0.71
CLK3-227ENST00000570296 HAUS3Q68CZ6 603 aa19.46■□□□□ 0.71
CLK3-227ENST00000570296 DBX2Q6ZNG2 339 aa19.46■□□□□ 0.71
CLK3-227ENST00000570296 DAW1Q8N136 415 aa19.46■□□□□ 0.71
CLK3-227ENST00000570296 FSIP1Q8NA03 581 aa19.46■□□□□ 0.71
CLK3-227ENST00000570296 NXPE2Q96DL1 559 aa19.46■□□□□ 0.71
CLK3-227ENST00000570296 HNRNPABQ99729 332 aaKnown RBP19.46■□□□□ 0.71
CLK3-227ENST00000570296 C17orf75Q9HAS0 396 aa19.46■□□□□ 0.71
CLK3-227ENST00000570296 TM7SF3Q9NS93 570 aa19.46■□□□□ 0.71
CLK3-227ENST00000570296 IGSF5Q9NSI5 407 aa19.46■□□□□ 0.71
CLK3-227ENST00000570296 A0A1B0GTW7 788 aa19.45■□□□□ 0.7
CLK3-227ENST00000570296 C2orf78A6NCI8 922 aa19.45■□□□□ 0.7
CLK3-227ENST00000570296 PIRO00625 290 aa19.45■□□□□ 0.7
CLK3-227ENST00000570296 ZBTB24O43167 697 aaPredicted RBP19.45■□□□□ 0.7
CLK3-227ENST00000570296 PFKLP17858 780 aa19.45■□□□□ 0.7
CLK3-227ENST00000570296 HDCP19113 662 aa19.45■□□□□ 0.7
CLK3-227ENST00000570296 KCNC4Q03721 635 aa19.45■□□□□ 0.7
CLK3-227ENST00000570296 STK3Q13188 491 aa19.45■□□□□ 0.7
CLK3-227ENST00000570296 NFE2Q16621 373 aaPredicted RBP19.45■□□□□ 0.7
CLK3-227ENST00000570296 SDHAF4Q5VUM1 108 aa19.45■□□□□ 0.7
CLK3-227ENST00000570296 PCSK4Q6UW60 755 aa19.45■□□□□ 0.7
CLK3-227ENST00000570296 IL27RAQ6UWB1 636 aa19.45■□□□□ 0.7
CLK3-227ENST00000570296 FILIP1Q7Z7B0 1213 aa19.45■□□□□ 0.7
CLK3-227ENST00000570296 ADGRG2Q8IZP9 1017 aa19.45■□□□□ 0.7
CLK3-227ENST00000570296 RHBDD1Q8TEB9 315 aa19.45■□□□□ 0.7
CLK3-227ENST00000570296 LRRC15Q8TF66 581 aa19.45■□□□□ 0.7
CLK3-227ENST00000570296 ABCB6Q9NP58 842 aa19.45■□□□□ 0.7
CLK3-227ENST00000570296 ZDHHC4Q9NPG8 344 aa19.45■□□□□ 0.7
CLK3-227ENST00000570296 CYP8B1Q9UNU6 501 aa19.45■□□□□ 0.7
CLK3-227ENST00000570296 NFE2L3Q9Y4A8 694 aa19.45■□□□□ 0.7
CLK3-227ENST00000570296 MYH11P35749 1972 aa19.44■□□□□ 0.7
CLK3-227ENST00000570296 CYB561D2O14569 222 aa19.44■□□□□ 0.7
CLK3-227ENST00000570296 SLC9A3R1O14745 358 aaPredicted RBP19.44■□□□□ 0.7
CLK3-227ENST00000570296 SLC16A4O15374 487 aa19.44■□□□□ 0.7
CLK3-227ENST00000570296 HIP1RO75146 1068 aa19.44■□□□□ 0.7
CLK3-227ENST00000570296 NDUFS2O75306 463 aa19.44■□□□□ 0.7
CLK3-227ENST00000570296 CILPO75339 1184 aa19.44■□□□□ 0.7
CLK3-227ENST00000570296 ADRB2P07550 413 aa19.44■□□□□ 0.7
CLK3-227ENST00000570296 RUFY3Q7L099 469 aa19.44■□□□□ 0.7
CLK3-227ENST00000570296 C12orf40Q86WS4 652 aa19.44■□□□□ 0.7
CLK3-227ENST00000570296 LEO1Q8WVC0 666 aaPredicted RBP19.44■□□□□ 0.7
CLK3-227ENST00000570296 NTPCRQ9BSD7 190 aaKnown RBP19.44■□□□□ 0.7
CLK3-227ENST00000570296 GAREM1Q9H706 876 aa19.44■□□□□ 0.7
CLK3-227ENST00000570296 IL21RQ9HBE5 538 aa19.44■□□□□ 0.7
CLK3-227ENST00000570296 ANO9A1A5B4 782 aa19.43■□□□□ 0.7
CLK3-227ENST00000570296 GOLGA8CPA6NN73 597 aa19.43■□□□□ 0.7
CLK3-227ENST00000570296 ERVH48-1M5A8F1 160 aa19.43■□□□□ 0.7
CLK3-227ENST00000570296 LEFTY2O00292 366 aa19.43■□□□□ 0.7
CLK3-227ENST00000570296 ADH1CP00326 375 aa19.43■□□□□ 0.7
CLK3-227ENST00000570296 NFICP08651 508 aa19.43■□□□□ 0.7
CLK3-227ENST00000570296 HOXB2P14652 356 aa19.43■□□□□ 0.7
CLK3-227ENST00000570296 TNFSF9P41273 254 aa19.43■□□□□ 0.7
CLK3-227ENST00000570296 MATKP42679 507 aa19.43■□□□□ 0.7
CLK3-227ENST00000570296 MATR3P43243 847 aaKnown RBP eCLIP19.43■□□□□ 0.7
CLK3-227ENST00000570296 TSPY1Q01534 308 aa19.43■□□□□ 0.7
CLK3-227ENST00000570296 KDSRQ06136 332 aa19.43■□□□□ 0.7
CLK3-227ENST00000570296 SAFBQ15424 915 aaKnown RBP eCLIP19.43■□□□□ 0.7
CLK3-227ENST00000570296 DDR2Q16832 855 aa19.43■□□□□ 0.7
CLK3-227ENST00000570296 ZNF513Q8N8E2 541 aaPredicted RBP19.43■□□□□ 0.7
CLK3-227ENST00000570296 DNASE2BQ8WZ79 361 aa19.43■□□□□ 0.7
CLK3-227ENST00000570296 WASF1Q92558 559 aa19.43■□□□□ 0.7
CLK3-227ENST00000570296 PYM1Q9BRP8 204 aaKnown RBP19.43■□□□□ 0.7
CLK3-227ENST00000570296 CCSER1Q9C0I3 900 aa19.43■□□□□ 0.7
CLK3-227ENST00000570296 TMLHEQ9NVH6 421 aa19.43■□□□□ 0.7
CLK3-227ENST00000570296 FNDC3AQ9Y2H6 1198 aaKnown RBP19.43■□□□□ 0.7
CLK3-227ENST00000570296 TEX15Q9BXT5 2789 aa19.42■□□□□ 0.7
CLK3-227ENST00000570296 A0A1W2PQF6 199 aa19.42■□□□□ 0.7
CLK3-227ENST00000570296 TNFSF14O43557 240 aa19.42■□□□□ 0.7
CLK3-227ENST00000570296 TLX3O43711 291 aaPredicted RBP19.42■□□□□ 0.7
CLK3-227ENST00000570296 ZXDBP98169 803 aa19.42■□□□□ 0.7
CLK3-227ENST00000570296 ATP2C1P98194 919 aaPredicted RBP19.42■□□□□ 0.7
CLK3-227ENST00000570296 ENOX2Q16206 610 aaKnown RBP19.42■□□□□ 0.7
CLK3-227ENST00000570296 ECM1Q16610 540 aa19.42■□□□□ 0.7
CLK3-227ENST00000570296 WSCD1Q658N2 575 aa19.42■□□□□ 0.7
CLK3-227ENST00000570296 TMPRSS12Q86WS5 348 aa19.42■□□□□ 0.7
CLK3-227ENST00000570296 CD302Q8IX05 232 aa19.42■□□□□ 0.7
CLK3-227ENST00000570296 PHTF2Q8N3S3 785 aa19.42■□□□□ 0.7
CLK3-227ENST00000570296 BAP1Q92560 729 aa19.42■□□□□ 0.7
CLK3-227ENST00000570296 WBP1Q96G27 269 aa19.42■□□□□ 0.7
CLK3-227ENST00000570296 HAPLN2Q9GZV7 340 aa19.42■□□□□ 0.7
CLK3-227ENST00000570296 RPF1Q9H9Y2 349 aaKnown RBP19.42■□□□□ 0.7
CLK3-227ENST00000570296 KCNG1Q9UIX4 513 aa19.42■□□□□ 0.7
CLK3-227ENST00000570296 PLK4O00444 970 aa19.41■□□□□ 0.7
CLK3-227ENST00000570296 ADH5P11766 374 aa19.41■□□□□ 0.7
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms