RNA–Protein interactions for RNA: ENST00000569406.5

CLK3-226, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 3,591 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-226ENST00000569406 EIF2S1P05198 315 aaKnown RBP11.3□□□□□ -0.6
CLK3-226ENST00000569406 P4HA1P13674 534 aa11.3□□□□□ -0.6
CLK3-226ENST00000569406 UQCRBP14927 111 aa11.3□□□□□ -0.6
CLK3-226ENST00000569406 NKX2-5P52952 324 aaPredicted RBP11.3□□□□□ -0.6
CLK3-226ENST00000569406 ORC2Q13416 577 aaPredicted RBP11.3□□□□□ -0.6
CLK3-226ENST00000569406 TRIM16LQ309B1 348 aa11.3□□□□□ -0.6
CLK3-226ENST00000569406 CCDC62Q6P9F0 684 aa11.3□□□□□ -0.6
CLK3-226ENST00000569406 ELMSAN1Q6PJG2 1045 aa11.3□□□□□ -0.6
CLK3-226ENST00000569406 LRRC55Q6ZSA7 311 aa11.3□□□□□ -0.6
CLK3-226ENST00000569406 ATP13A3Q9H7F0 1226 aa11.3□□□□□ -0.6
CLK3-226ENST00000569406 DBNDD1Q9H9R9 158 aa11.3□□□□□ -0.6
CLK3-226ENST00000569406 MAP3K20Q9NYL2 800 aaKnown RBP11.3□□□□□ -0.6
CLK3-226ENST00000569406 RWDD3Q9Y3V2 267 aa11.3□□□□□ -0.6
CLK3-226ENST00000569406 TAF4O00268 1085 aa11.3□□□□□ -0.6
CLK3-226ENST00000569406 MEIS2O14770 477 aa11.3□□□□□ -0.6
CLK3-226ENST00000569406 TAL1P17542 331 aaPredicted RBP11.3□□□□□ -0.6
CLK3-226ENST00000569406 EEF1GP26641 437 aaKnown RBP11.3□□□□□ -0.6
CLK3-226ENST00000569406 CRABP2P29373 138 aa11.3□□□□□ -0.6
CLK3-226ENST00000569406 CIITAP33076 1130 aa11.3□□□□□ -0.6
CLK3-226ENST00000569406 PTGS2P35354 604 aa11.3□□□□□ -0.6
CLK3-226ENST00000569406 CRKP46108 304 aa11.3□□□□□ -0.6
CLK3-226ENST00000569406 CASP5P51878 434 aa11.3□□□□□ -0.6
CLK3-226ENST00000569406 HIRAP54198 1017 aaPredicted RBP11.3□□□□□ -0.6
CLK3-226ENST00000569406 PLTPP55058 493 aa11.3□□□□□ -0.6
CLK3-226ENST00000569406 AP2B1P63010 937 aa11.3□□□□□ -0.6
CLK3-226ENST00000569406 MTFR1Q15390 333 aa11.3□□□□□ -0.6
CLK3-226ENST00000569406 LPCAT4Q643R3 524 aa11.3□□□□□ -0.6
CLK3-226ENST00000569406 LVRNQ6Q4G3 990 aa11.3□□□□□ -0.6
CLK3-226ENST00000569406 LENG9Q96B70 501 aa11.3□□□□□ -0.6
CLK3-226ENST00000569406 PLEKHA8Q96JA3 519 aa11.3□□□□□ -0.6
CLK3-226ENST00000569406 MBOAT7Q96N66 472 aa11.3□□□□□ -0.6
CLK3-226ENST00000569406 MAGEF1Q9HAY2 307 aa11.3□□□□□ -0.6
CLK3-226ENST00000569406 hCG_1984214I3L0E3 225 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 PIK3CDO00329 1044 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 GSC2O15499 205 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 ZNF254O75437 659 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 MMP10P09238 476 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 EIF4A3P38919 411 aaKnown RBP11.29□□□□□ -0.6
CLK3-226ENST00000569406 RAB15P59190 212 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 LMNB2Q03252 620 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 NCOA4Q13772 614 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 STILQ15468 1287 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 KYNUQ16719 465 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 C6orf163Q5TEZ5 329 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 AAGABQ6PD74 315 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 ERI1Q8IV48 349 aaKnown RBP11.29□□□□□ -0.6
CLK3-226ENST00000569406 SLC25A41Q8N5S1 370 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 P2RX5Q93086 422 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 TUBGCP2Q9BSJ2 902 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 EHMT1Q9H9B1 1298 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 RSL24D1Q9UHA3 163 aaKnown RBP11.29□□□□□ -0.6
CLK3-226ENST00000569406 ZNHIT2Q9UHR6 403 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 COMMD10Q9Y6G5 202 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 FER1L6Q2WGJ9 1857 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 KRIT1O00522 736 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 KLHL41O60662 606 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 SMIM18P0DKX4 95 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 CCNE1P24864 410 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 AQP4P55087 323 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 YWHAGP61981 247 aaKnown RBP eCLIP11.29□□□□□ -0.6
CLK3-226ENST00000569406 DNAJC3Q13217 504 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 SFT2D3Q587I9 215 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 HYIQ5T013 277 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 LPCAT2Q7L5N7 544 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 CKAP2Q8WWK9 683 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 TAMM41Q96BW9 452 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 BTBD10Q9BSF8 475 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 TRIM51Q9BSJ1 452 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 IDI2Q9BXS1 227 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 POLMQ9NP87 494 aaPredicted RBP11.29□□□□□ -0.6
CLK3-226ENST00000569406 SIK3Q9Y2K2 1263 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 BICDL2A1A5D9 508 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 GRID2IPA4D2P6 1211 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 IL32P24001 234 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 PGM1P36871 562 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 ADCY7P51828 1080 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 KIAA1755Q5JYT7 1200 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 HGSNATQ68CP4 663 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 FAM9CQ8IZT9 166 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 SPARTQ8N0X7 666 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 THAP11Q96EK4 314 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 SNF8Q96H20 258 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 MRIQ9BWK5 157 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 SENP6Q9GZR1 1112 aaPredicted RBP11.29□□□□□ -0.6
CLK3-226ENST00000569406 GIMAP4Q9NUV9 329 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 IFT52Q9Y366 437 aa11.29□□□□□ -0.6
CLK3-226ENST00000569406 J3QRK9 145 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 ZBTB5O15062 677 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 CDH2P19022 906 aaPredicted RBP11.28□□□□□ -0.6
CLK3-226ENST00000569406 YARSP54577 528 aaKnown RBP11.28□□□□□ -0.6
CLK3-226ENST00000569406 TPTEP56180 551 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 FOLH1Q04609 750 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 CALCRLQ16602 461 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 ARHGEF18Q6ZSZ5 1173 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 MTDHQ86UE4 582 aaKnown RBP11.28□□□□□ -0.6
CLK3-226ENST00000569406 SNX29Q8TEQ0 813 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 HERVK_113Q902F9 699 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 BORCS5Q969J3 196 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 FBXL8Q96CD0 374 aa11.28□□□□□ -0.6
CLK3-226ENST00000569406 OMA1Q96E52 524 aa11.28□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 57.3 ms