RNA–Protein interactions for RNA: ENST00000569030.5

CLN3-237, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,109 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-237ENST00000569030 CEP295NLQ96MC4 621 aa19.56■□□□□ 0.72
CLN3-237ENST00000569030 ELOVL4Q9GZR5 314 aa19.56■□□□□ 0.72
CLN3-237ENST00000569030 TRPC7Q9HCX4 862 aa19.56■□□□□ 0.72
CLN3-237ENST00000569030 GKN1Q9NS71 199 aa19.56■□□□□ 0.72
CLN3-237ENST00000569030 HOOK1Q9UJC3 728 aaKnown RBP19.56■□□□□ 0.72
CLN3-237ENST00000569030 MRPS17Q9Y2R5 130 aaKnown RBP19.56■□□□□ 0.72
CLN3-237ENST00000569030 FAM186AA6NE01 2351 aa19.55■□□□□ 0.72
CLN3-237ENST00000569030 TRIM49BA6NDI0 452 aa19.55■□□□□ 0.72
CLN3-237ENST00000569030 KINO60870 393 aaKnown RBP19.55■□□□□ 0.72
CLN3-237ENST00000569030 CD44P16070 742 aaKnown RBP19.55■□□□□ 0.72
CLN3-237ENST00000569030 PTPRZ1P23471 2315 aaPredicted RBP19.55■□□□□ 0.72
CLN3-237ENST00000569030 CCNE1P24864 410 aa19.55■□□□□ 0.72
CLN3-237ENST00000569030 NBL1P41271 181 aa19.55■□□□□ 0.72
CLN3-237ENST00000569030 KPNA1P52294 538 aaPredicted RBP19.55■□□□□ 0.72
CLN3-237ENST00000569030 NDST1P52848 882 aa19.55■□□□□ 0.72
CLN3-237ENST00000569030 MLLT6P55198 1093 aaPredicted RBP19.55■□□□□ 0.72
CLN3-237ENST00000569030 NOP14P78316 857 aaKnown RBP19.55■□□□□ 0.72
CLN3-237ENST00000569030 FRMD5Q7Z6J6 570 aa19.55■□□□□ 0.72
CLN3-237ENST00000569030 ZC3H3Q8IXZ2 948 aaKnown RBP19.55■□□□□ 0.72
CLN3-237ENST00000569030 ARL14EPQ8N8R7 260 aaPredicted RBP19.55■□□□□ 0.72
CLN3-237ENST00000569030 KCNK16Q96T55 309 aa19.55■□□□□ 0.72
CLN3-237ENST00000569030 TTLL2Q9BWV7 592 aa19.55■□□□□ 0.72
CLN3-237ENST00000569030 TMEM8AQ9HCN3 771 aa19.55■□□□□ 0.72
CLN3-237ENST00000569030 GCNT4Q9P109 453 aa19.55■□□□□ 0.72
CLN3-237ENST00000569030 MAN1B1Q9UKM7 699 aa19.55■□□□□ 0.72
CLN3-237ENST00000569030 FRYLO94915 3013 aa19.55■□□□□ 0.72
CLN3-237ENST00000569030 PROB1E7EW31 1015 aa19.54■□□□□ 0.72
CLN3-237ENST00000569030 BMP6P22004 513 aa19.54■□□□□ 0.72
CLN3-237ENST00000569030 GTF2H1P32780 548 aa19.54■□□□□ 0.72
CLN3-237ENST00000569030 RPS9P46781 194 aaKnown RBP19.54■□□□□ 0.72
CLN3-237ENST00000569030 PLCB2Q00722 1185 aa19.54■□□□□ 0.72
CLN3-237ENST00000569030 ZNF268Q14587 947 aaPredicted RBP19.54■□□□□ 0.72
CLN3-237ENST00000569030 FUKQ8N0W3 1084 aa19.54■□□□□ 0.72
CLN3-237ENST00000569030 CRYBG2Q8N1P7 616 aa19.54■□□□□ 0.72
CLN3-237ENST00000569030 C12orf29Q8N999 325 aa19.54■□□□□ 0.72
CLN3-237ENST00000569030 SEMA4DQ92854 862 aa19.54■□□□□ 0.72
CLN3-237ENST00000569030 TNIP3Q96KP6 325 aa19.54■□□□□ 0.72
CLN3-237ENST00000569030 FAM83CQ9BQN1 747 aa19.54■□□□□ 0.72
CLN3-237ENST00000569030 MED10Q9BTT4 135 aa19.54■□□□□ 0.72
CLN3-237ENST00000569030 SPATA6Q9NWH7 488 aaPredicted RBP19.54■□□□□ 0.72
CLN3-237ENST00000569030 THG1LQ9NWX6 298 aaKnown RBP19.54■□□□□ 0.72
CLN3-237ENST00000569030 ZNF292O60281 2723 aa19.54■□□□□ 0.72
CLN3-237ENST00000569030 TRAV19A0A0A6YYK7 116 aa19.53■□□□□ 0.72
CLN3-237ENST00000569030 OTOL1A6NHN0 477 aaPredicted RBP19.53■□□□□ 0.72
CLN3-237ENST00000569030 NCAM2O15394 837 aa19.53■□□□□ 0.72
CLN3-237ENST00000569030 USP17L7P0C7H9 530 aa19.53■□□□□ 0.72
CLN3-237ENST00000569030 SP9P0CG40 484 aa19.53■□□□□ 0.72
CLN3-237ENST00000569030 EPB41P11171 864 aaKnown RBP19.53■□□□□ 0.72
CLN3-237ENST00000569030 CCDC130P13994 396 aa19.53■□□□□ 0.72
CLN3-237ENST00000569030 FKBP3Q00688 224 aaKnown RBP19.53■□□□□ 0.72
CLN3-237ENST00000569030 WDR44Q5JSH3 913 aa19.53■□□□□ 0.72
CLN3-237ENST00000569030 KRT39Q6A163 491 aa19.53■□□□□ 0.72
CLN3-237ENST00000569030 TRIM68Q6AZZ1 485 aa19.53■□□□□ 0.72
CLN3-237ENST00000569030 TXNDC11Q6PKC3 985 aa19.53■□□□□ 0.72
CLN3-237ENST00000569030 FAM35AQ86V20 835 aa19.53■□□□□ 0.72
CLN3-237ENST00000569030 UNC93AQ86WB7 457 aa19.53■□□□□ 0.72
CLN3-237ENST00000569030 TWNKQ96RR1 684 aa19.53■□□□□ 0.72
CLN3-237ENST00000569030 TSG101Q99816 390 aa19.53■□□□□ 0.72
CLN3-237ENST00000569030 C8orf33Q9H7E9 229 aaPredicted RBP19.53■□□□□ 0.72
CLN3-237ENST00000569030 KIF9Q9HAQ2 790 aa19.53■□□□□ 0.72
CLN3-237ENST00000569030 LMAN1LQ9HAT1 526 aa19.53■□□□□ 0.72
CLN3-237ENST00000569030 HPS4Q9NQG7 708 aa19.53■□□□□ 0.72
CLN3-237ENST00000569030 TRPM5Q9NZQ8 1165 aa19.53■□□□□ 0.72
CLN3-237ENST00000569030 MYOFQ9NZM1 2061 aa19.53■□□□□ 0.72
CLN3-237ENST00000569030 CFAP54Q96N23 3096 aa19.53■□□□□ 0.72
CLN3-237ENST00000569030 ZNF840PA6NDX5 716 aa19.52■□□□□ 0.72
CLN3-237ENST00000569030 SPECC1L-ADORA2AF8WAN1 911 aa19.52■□□□□ 0.72
CLN3-237ENST00000569030 CKMP06732 381 aa19.52■□□□□ 0.72
CLN3-237ENST00000569030 CHRNB1P11230 501 aa19.52■□□□□ 0.72
CLN3-237ENST00000569030 HDCP19113 662 aa19.52■□□□□ 0.72
CLN3-237ENST00000569030 CTHP32929 405 aa19.52■□□□□ 0.72
CLN3-237ENST00000569030 MAGEA9P43362 315 aa19.52■□□□□ 0.72
CLN3-237ENST00000569030 INCA1Q0VD86 236 aa19.52■□□□□ 0.72
CLN3-237ENST00000569030 IFRD2Q12894 506 aaPredicted RBP19.52■□□□□ 0.72
CLN3-237ENST00000569030 TAF10Q12962 218 aa19.52■□□□□ 0.72
CLN3-237ENST00000569030 NUP93Q8N1F7 819 aa19.52■□□□□ 0.72
CLN3-237ENST00000569030 SCAMP5Q8TAC9 235 aa19.52■□□□□ 0.72
CLN3-237ENST00000569030 SLC2A14Q8TDB8 520 aa19.52■□□□□ 0.72
CLN3-237ENST00000569030 GTPBP4Q9BZE4 634 aaKnown RBP19.52■□□□□ 0.72
CLN3-237ENST00000569030 IMPG2Q9BZV3 1241 aa19.52■□□□□ 0.72
CLN3-237ENST00000569030 NIF3L1Q9GZT8 377 aa19.52■□□□□ 0.72
CLN3-237ENST00000569030 EBF3Q9H4W6 596 aa19.52■□□□□ 0.72
CLN3-237ENST00000569030 EP300Q09472 2414 aaPredicted RBP19.52■□□□□ 0.71
CLN3-237ENST00000569030 MYO16Q9Y6X6 1858 aa19.52■□□□□ 0.71
CLN3-237ENST00000569030 PPP1R3GB7ZBB8 358 aa19.51■□□□□ 0.71
CLN3-237ENST00000569030 TNFRSF10BO14763 440 aa19.51■□□□□ 0.71
CLN3-237ENST00000569030 SLC16A3O15427 465 aaKnown RBP19.51■□□□□ 0.71
CLN3-237ENST00000569030 AP1G2O75843 785 aa19.51■□□□□ 0.71
CLN3-237ENST00000569030 BEST1O76090 585 aa19.51■□□□□ 0.71
CLN3-237ENST00000569030 ZXDBP98169 803 aa19.51■□□□□ 0.71
CLN3-237ENST00000569030 LRRC63Q05C16 580 aa19.51■□□□□ 0.71
CLN3-237ENST00000569030 MTAPQ13126 283 aa19.51■□□□□ 0.71
CLN3-237ENST00000569030 ZNF77Q15935 545 aa19.51■□□□□ 0.71
CLN3-237ENST00000569030 ITPRIPL2Q3MIP1 535 aa19.51■□□□□ 0.71
CLN3-237ENST00000569030 CBWD6Q4V339 395 aa19.51■□□□□ 0.71
CLN3-237ENST00000569030 CBWD3Q5JTY5 395 aa19.51■□□□□ 0.71
CLN3-237ENST00000569030 CBWD5Q5RIA9 395 aa19.51■□□□□ 0.71
CLN3-237ENST00000569030 RALGPS2Q86X27 583 aaPredicted RBP19.51■□□□□ 0.71
CLN3-237ENST00000569030 TTC16Q8NEE8 873 aa19.51■□□□□ 0.71
CLN3-237ENST00000569030 ZMIZ2Q8NF64 920 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms