RNA–Protein interactions for RNA: ENST00000568443.2

CLN3-232, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 969 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-232ENST00000568443 GCNT4Q9P109 453 aa23.94■■□□□ 1.42
CLN3-232ENST00000568443 TRAF3IP3Q9Y228 551 aa23.94■■□□□ 1.42
CLN3-232ENST00000568443 GREB1Q4ZG55 1949 aa23.94■■□□□ 1.42
CLN3-232ENST00000568443 OTOGLQ3ZCN5 2332 aa23.93■■□□□ 1.42
CLN3-232ENST00000568443 PTPRDP23468 1912 aa23.93■■□□□ 1.42
CLN3-232ENST00000568443 C2orf78A6NCI8 922 aa23.93■■□□□ 1.42
CLN3-232ENST00000568443 LILRB5O75023 590 aa23.93■■□□□ 1.42
CLN3-232ENST00000568443 ZNF202O95125 648 aa23.93■■□□□ 1.42
CLN3-232ENST00000568443 VNN1O95497 513 aa23.93■■□□□ 1.42
CLN3-232ENST00000568443 P4HA1P13674 534 aa23.93■■□□□ 1.42
CLN3-232ENST00000568443 PDE6CP51160 858 aa23.93■■□□□ 1.42
CLN3-232ENST00000568443 USP46P62068 366 aa23.93■■□□□ 1.42
CLN3-232ENST00000568443 NOP14P78316 857 aaKnown RBP23.93■■□□□ 1.42
CLN3-232ENST00000568443 SATB1Q01826 763 aa23.93■■□□□ 1.42
CLN3-232ENST00000568443 MTF1Q14872 753 aa23.93■■□□□ 1.42
CLN3-232ENST00000568443 SGSM1Q2NKQ1 1148 aa23.93■■□□□ 1.42
CLN3-232ENST00000568443 WDR44Q5JSH3 913 aa23.93■■□□□ 1.42
CLN3-232ENST00000568443 SYNPOQ8N3V7 929 aa23.93■■□□□ 1.42
CLN3-232ENST00000568443 RIN3Q8TB24 985 aa23.93■■□□□ 1.42
CLN3-232ENST00000568443 TTLL2Q9BWV7 592 aa23.93■■□□□ 1.42
CLN3-232ENST00000568443 B3GNT5Q9BYG0 378 aa23.93■■□□□ 1.42
CLN3-232ENST00000568443 ZNF518BQ9C0D4 1074 aa23.93■■□□□ 1.42
CLN3-232ENST00000568443 GOLPH3LQ9H4A5 285 aa23.93■■□□□ 1.42
CLN3-232ENST00000568443 SMYD3Q9H7B4 428 aa23.93■■□□□ 1.42
CLN3-232ENST00000568443 GDPD2Q9HCC8 539 aa23.93■■□□□ 1.42
CLN3-232ENST00000568443 MAPK8IP1Q9UQF2 711 aa23.93■■□□□ 1.42
CLN3-232ENST00000568443 ANAPC1Q9H1A4 1944 aa23.92■■□□□ 1.42
CLN3-232ENST00000568443 OTOL1A6NHN0 477 aaPredicted RBP23.92■■□□□ 1.42
CLN3-232ENST00000568443 CLDN5O00501 218 aa23.92■■□□□ 1.42
CLN3-232ENST00000568443 IKBKBO14920 756 aa23.92■■□□□ 1.42
CLN3-232ENST00000568443 TDGF1P13385 188 aa23.92■■□□□ 1.42
CLN3-232ENST00000568443 ARSAP15289 507 aa23.92■■□□□ 1.42
CLN3-232ENST00000568443 RAP1GAPP47736 663 aa23.92■■□□□ 1.42
CLN3-232ENST00000568443 PPP3CCP48454 512 aa23.92■■□□□ 1.42
CLN3-232ENST00000568443 CCINQ13939 588 aa23.92■■□□□ 1.42
CLN3-232ENST00000568443 BECN1Q14457 450 aa23.92■■□□□ 1.42
CLN3-232ENST00000568443 Q6ZS52 159 aa23.92■■□□□ 1.42
CLN3-232ENST00000568443 ELMO3Q96BJ8 720 aa23.92■■□□□ 1.42
CLN3-232ENST00000568443 CCDC34Q96HJ3 373 aa23.92■■□□□ 1.42
CLN3-232ENST00000568443 TNIP3Q96KP6 325 aa23.92■■□□□ 1.42
CLN3-232ENST00000568443 DUS2Q9NX74 493 aaKnown RBP23.92■■□□□ 1.42
CLN3-232ENST00000568443 ATP8B3O60423 1300 aa23.91■■□□□ 1.42
CLN3-232ENST00000568443 PFKLP17858 780 aa23.91■■□□□ 1.42
CLN3-232ENST00000568443 IFNAR2P48551 515 aa23.91■■□□□ 1.42
CLN3-232ENST00000568443 CACNA2D1P54289 1103 aa23.91■■□□□ 1.42
CLN3-232ENST00000568443 GRSF1Q12849 480 aaKnown RBP eCLIP23.91■■□□□ 1.42
CLN3-232ENST00000568443 ZNF77Q15935 545 aa23.91■■□□□ 1.42
CLN3-232ENST00000568443 ZACNQ401N2 412 aa23.91■■□□□ 1.42
CLN3-232ENST00000568443 SCARA5Q6ZMJ2 495 aa23.91■■□□□ 1.42
CLN3-232ENST00000568443 SV2AQ7L0J3 742 aa23.91■■□□□ 1.42
CLN3-232ENST00000568443 CPA6Q8N4T0 437 aa23.91■■□□□ 1.42
CLN3-232ENST00000568443 SH3RF2Q8TEC5 729 aa23.91■■□□□ 1.42
CLN3-232ENST00000568443 OSCP1Q8WVF1 389 aa23.91■■□□□ 1.42
CLN3-232ENST00000568443 TAF4BQ92750 862 aa23.91■■□□□ 1.42
CLN3-232ENST00000568443 MED10Q9BTT4 135 aa23.91■■□□□ 1.42
CLN3-232ENST00000568443 EPC1Q9H2F5 836 aa23.91■■□□□ 1.42
CLN3-232ENST00000568443 NCDNQ9UBB6 729 aa23.91■■□□□ 1.42
CLN3-232ENST00000568443 GPR179Q6PRD1 2367 aa23.91■■□□□ 1.42
CLN3-232ENST00000568443 TRDMT1O14717 391 aaKnown RBP23.9■■□□□ 1.42
CLN3-232ENST00000568443 MAPK13O15264 365 aa23.9■■□□□ 1.42
CLN3-232ENST00000568443 ABL1P00519 1130 aa23.9■■□□□ 1.42
CLN3-232ENST00000568443 NR2F2P24468 414 aa23.9■■□□□ 1.42
CLN3-232ENST00000568443 RPL13P26373 211 aaKnown RBP23.9■■□□□ 1.42
CLN3-232ENST00000568443 VAMP7P51809 220 aa23.9■■□□□ 1.42
CLN3-232ENST00000568443 TMEM196Q5HYL7 178 aa23.9■■□□□ 1.42
CLN3-232ENST00000568443 KIAA2013Q8IYS2 634 aa23.9■■□□□ 1.42
CLN3-232ENST00000568443 GUF1Q8N442 669 aaKnown RBP23.9■■□□□ 1.42
CLN3-232ENST00000568443 DCLK2Q8N568 766 aa23.9■■□□□ 1.42
CLN3-232ENST00000568443 EXOC4Q96A65 974 aa23.9■■□□□ 1.42
CLN3-232ENST00000568443 SLITRK1Q96PX8 696 aa23.9■■□□□ 1.42
CLN3-232ENST00000568443 ARHGAP26Q9UNA1 814 aa23.9■■□□□ 1.42
CLN3-232ENST00000568443 ZNF840PA6NDX5 716 aa23.89■■□□□ 1.41
CLN3-232ENST00000568443 IFRD2Q12894 506 aaPredicted RBP23.89■■□□□ 1.41
CLN3-232ENST00000568443 TAF10Q12962 218 aa23.89■■□□□ 1.41
CLN3-232ENST00000568443 USP4Q13107 963 aa23.89■■□□□ 1.41
CLN3-232ENST00000568443 NFIL3Q16649 462 aa23.89■■□□□ 1.41
CLN3-232ENST00000568443 NUP93Q8N1F7 819 aa23.89■■□□□ 1.41
CLN3-232ENST00000568443 SECISBP2LQ93073 1101 aaKnown RBP23.89■■□□□ 1.41
CLN3-232ENST00000568443 ATP2A3Q93084 1043 aa23.89■■□□□ 1.41
CLN3-232ENST00000568443 SDCBP2Q9H190 292 aa23.89■■□□□ 1.41
CLN3-232ENST00000568443 ECT2Q9H8V3 914 aa23.89■■□□□ 1.41
CLN3-232ENST00000568443 TMEM30AQ9NV96 361 aa23.89■■□□□ 1.41
CLN3-232ENST00000568443 SMG5Q9UPR3 1016 aaKnown RBP23.89■■□□□ 1.41
CLN3-232ENST00000568443 WNT6Q9Y6F9 365 aa23.89■■□□□ 1.41
CLN3-232ENST00000568443 GOLGA6L4A6NEF3 574 aa23.88■■□□□ 1.41
CLN3-232ENST00000568443 AKAP3O75969 853 aa23.88■■□□□ 1.41
CLN3-232ENST00000568443 PAPSS2O95340 614 aaPredicted RBP23.88■■□□□ 1.41
CLN3-232ENST00000568443 KRT13P13646 458 aa23.88■■□□□ 1.41
CLN3-232ENST00000568443 GJA4P35212 333 aa23.88■■□□□ 1.41
CLN3-232ENST00000568443 PIK3CAP42336 1068 aa23.88■■□□□ 1.41
CLN3-232ENST00000568443 NR1H3Q13133 447 aa23.88■■□□□ 1.41
CLN3-232ENST00000568443 ADAM9Q13443 819 aa23.88■■□□□ 1.41
CLN3-232ENST00000568443 FSTL4Q6MZW2 842 aa23.88■■□□□ 1.41
CLN3-232ENST00000568443 INTS8Q75QN2 995 aaKnown RBP23.88■■□□□ 1.41
CLN3-232ENST00000568443 ACOT1Q86TX2 421 aa23.88■■□□□ 1.41
CLN3-232ENST00000568443 KCNK16Q96T55 309 aa23.88■■□□□ 1.41
CLN3-232ENST00000568443 RAB23Q9ULC3 237 aa23.88■■□□□ 1.41
CLN3-232ENST00000568443 RTN3O95197 1032 aaPredicted RBP23.87■■□□□ 1.41
CLN3-232ENST00000568443 ASS1P00966 412 aaKnown RBP23.87■■□□□ 1.41
CLN3-232ENST00000568443 HLA-DRAP01903 254 aa23.87■■□□□ 1.41
Retrieved 100 of 20,778 RNA–protein pairs in 19.9 ms