RNA–Protein interactions for RNA: ENST00000568191.1

VPS35-207, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 520 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-207ENST00000568191 TISP43B9A030 160 aa3.59□□□□□ -1.83
VPS35-207ENST00000568191 hCG_1984214I3L0E3 225 aa3.59□□□□□ -1.83
VPS35-207ENST00000568191 BTN3A1O00481 513 aa3.59□□□□□ -1.83
VPS35-207ENST00000568191 ZNF213O14771 459 aa3.59□□□□□ -1.83
VPS35-207ENST00000568191 DSCR3O14972 297 aa3.59□□□□□ -1.83
VPS35-207ENST00000568191 GCATO75600 419 aa3.59□□□□□ -1.83
VPS35-207ENST00000568191 RNF8O76064 485 aa3.59□□□□□ -1.83
VPS35-207ENST00000568191 ABLIM3O94929 683 aa3.59□□□□□ -1.83
VPS35-207ENST00000568191 ITGB6P18564 788 aa3.59□□□□□ -1.83
VPS35-207ENST00000568191 CCT4P50991 539 aaKnown RBP3.59□□□□□ -1.83
VPS35-207ENST00000568191 PIN1Q13526 163 aaPredicted RBP3.59□□□□□ -1.83
VPS35-207ENST00000568191 CCNIQ14094 377 aa3.59□□□□□ -1.83
VPS35-207ENST00000568191 TTF1Q15361 905 aaPredicted RBP3.59□□□□□ -1.83
VPS35-207ENST00000568191 CERCAMQ5T4B2 595 aa3.59□□□□□ -1.83
VPS35-207ENST00000568191 CAND1Q86VP6 1230 aaKnown RBP3.59□□□□□ -1.83
VPS35-207ENST00000568191 CHSY1Q86X52 802 aa3.59□□□□□ -1.83
VPS35-207ENST00000568191 GAS2L3Q86XJ1 694 aa3.59□□□□□ -1.83
VPS35-207ENST00000568191 C16orf71Q8IYS4 520 aaPredicted RBP3.59□□□□□ -1.83
VPS35-207ENST00000568191 ABRAQ8N0Z2 381 aa3.59□□□□□ -1.83
VPS35-207ENST00000568191 FAM177A1Q8N128 213 aaPredicted RBP3.59□□□□□ -1.83
VPS35-207ENST00000568191 ADAMTS18Q8TE60 1221 aa3.59□□□□□ -1.83
VPS35-207ENST00000568191 SMCR8Q8TEV9 937 aaPredicted RBP3.59□□□□□ -1.83
VPS35-207ENST00000568191 HMCESQ96FZ2 354 aa3.59□□□□□ -1.83
VPS35-207ENST00000568191 MESP1Q9BRJ9 268 aa3.59□□□□□ -1.83
VPS35-207ENST00000568191 MS4A7Q9GZW8 240 aaPredicted RBP3.59□□□□□ -1.83
VPS35-207ENST00000568191 STAP2Q9UGK3 403 aa3.59□□□□□ -1.83
VPS35-207ENST00000568191 AMFRQ9UKV5 643 aa3.59□□□□□ -1.83
VPS35-207ENST00000568191 MAFFQ9ULX9 164 aa3.59□□□□□ -1.83
VPS35-207ENST00000568191 USP22Q9UPT9 525 aa3.59□□□□□ -1.83
VPS35-207ENST00000568191 MRPS17Q9Y2R5 130 aaKnown RBP3.59□□□□□ -1.83
VPS35-207ENST00000568191 WDR17Q8IZU2 1322 aa3.59□□□□□ -1.83
VPS35-207ENST00000568191 CYP2D7A0A087X1C5 515 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 KCNU1A8MYU2 1149 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 BTBD19C9JJ37 291 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 TMEM232C9JQI7 657 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 ERC2O15083 957 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 PHGDHO43175 533 aaKnown RBP3.58□□□□□ -1.84
VPS35-207ENST00000568191 RGS10O43665 173 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 UBXN7O94888 489 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 IGKV2-30P06310 120 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 EPHB1P54762 984 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 SLC13A2Q13183 592 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 ZNF267Q14586 743 aaPredicted RBP3.58□□□□□ -1.84
VPS35-207ENST00000568191 MLC1Q15049 377 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 ETFDHQ16134 617 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 ANO6Q4KMQ2 910 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 PLA1AQ53H76 456 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 CEP78Q5JTW2 689 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 C11orf87Q6NUJ2 197 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 ZNF66Q6ZN08 573 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 MRPL10Q7Z7H8 261 aaKnown RBP3.58□□□□□ -1.84
VPS35-207ENST00000568191 SFTPA1Q8IWL2 248 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 SLC35G2Q8TBE7 412 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 BPIFB1Q8TDL5 484 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 MRGPRX1Q96LB2 322 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 LRGUKQ96M69 825 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 C5orf34Q96MH7 638 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 PPP1R9BQ96SB3 815 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 P2RX7Q99572 595 aaKnown RBP3.58□□□□□ -1.84
VPS35-207ENST00000568191 TMEM79Q9BSE2 394 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 QTRT1Q9BXR0 403 aaKnown RBP3.58□□□□□ -1.84
VPS35-207ENST00000568191 CIPCQ9C0C6 399 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 ZNF518BQ9C0D4 1074 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 PRSS22Q9GZN4 317 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 ZCWPW1Q9H0M4 648 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 CXorf36Q9H7Y0 433 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 A1CFQ9NQ94 594 aaKnown RBP3.58□□□□□ -1.84
VPS35-207ENST00000568191 ANLNQ9NQW6 1124 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 SNX15Q9NRS6 342 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 GABRQQ9UN88 632 aa3.58□□□□□ -1.84
VPS35-207ENST00000568191 A0A087WWL8 130 aa3.57□□□□□ -1.84
VPS35-207ENST00000568191 SMIM35A0A1B0GVV1 85 aa3.57□□□□□ -1.84
VPS35-207ENST00000568191 MYMKA6NI61 221 aa3.57□□□□□ -1.84
VPS35-207ENST00000568191 M0R3H8 397 aa3.57□□□□□ -1.84
VPS35-207ENST00000568191 AP4M1O00189 453 aa3.57□□□□□ -1.84
VPS35-207ENST00000568191 CES2O00748 559 aa3.57□□□□□ -1.84
VPS35-207ENST00000568191 PPEF2O14830 753 aa3.57□□□□□ -1.84
VPS35-207ENST00000568191 CTNND1O60716 968 aaKnown RBP3.57□□□□□ -1.84
VPS35-207ENST00000568191 MOSPD3O75425 235 aa3.57□□□□□ -1.84
VPS35-207ENST00000568191 PDGFRBP09619 1106 aa3.57□□□□□ -1.84
VPS35-207ENST00000568191 KCNA3P22001 575 aa3.57□□□□□ -1.84
VPS35-207ENST00000568191 IL1R2P27930 398 aa3.57□□□□□ -1.84
VPS35-207ENST00000568191 EPHA3P29320 983 aa3.57□□□□□ -1.84
VPS35-207ENST00000568191 SP2Q02086 613 aa3.57□□□□□ -1.84
VPS35-207ENST00000568191 MAPK7Q13164 816 aa3.57□□□□□ -1.84
VPS35-207ENST00000568191 LAMB3Q13751 1172 aa3.57□□□□□ -1.84
VPS35-207ENST00000568191 FNDC1Q4ZHG4 1894 aaPredicted RBP3.57□□□□□ -1.84
VPS35-207ENST00000568191 KIRREL2Q6UWL6 708 aa3.57□□□□□ -1.84
VPS35-207ENST00000568191 Q8N9P0 234 aaPredicted RBP3.57□□□□□ -1.84
VPS35-207ENST00000568191 C8orf58Q8NAV2 365 aa3.57□□□□□ -1.84
VPS35-207ENST00000568191 PLBD2Q8NHP8 589 aa3.57□□□□□ -1.84
VPS35-207ENST00000568191 RAPGEF4Q8WZA2 1011 aa3.57□□□□□ -1.84
VPS35-207ENST00000568191 SH2D3AQ9BRG2 576 aa3.57□□□□□ -1.84
VPS35-207ENST00000568191 C17orf80Q9BSJ5 609 aa3.57□□□□□ -1.84
VPS35-207ENST00000568191 TRIM54Q9BYV2 358 aa3.57□□□□□ -1.84
VPS35-207ENST00000568191 SLC12A5Q9H2X9 1139 aa3.57□□□□□ -1.84
VPS35-207ENST00000568191 DDX56Q9NY93 547 aaKnown RBP3.57□□□□□ -1.84
VPS35-207ENST00000568191 CAMSAP3Q9P1Y5 1249 aaPredicted RBP3.57□□□□□ -1.84
VPS35-207ENST00000568191 CAPN8A6NHC0 703 aa3.56□□□□□ -1.84
VPS35-207ENST00000568191 RFPL1O75677 317 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms