RNA–Protein interactions for RNA: ENST00000565140.5

CLN3-214, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,225 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-214ENST00000565140 CEP295NLQ96MC4 621 aa19.56■□□□□ 0.72
CLN3-214ENST00000565140 ELOVL4Q9GZR5 314 aa19.56■□□□□ 0.72
CLN3-214ENST00000565140 TRPC7Q9HCX4 862 aa19.56■□□□□ 0.72
CLN3-214ENST00000565140 GKN1Q9NS71 199 aa19.56■□□□□ 0.72
CLN3-214ENST00000565140 HOOK1Q9UJC3 728 aaKnown RBP19.56■□□□□ 0.72
CLN3-214ENST00000565140 MRPS17Q9Y2R5 130 aaKnown RBP19.56■□□□□ 0.72
CLN3-214ENST00000565140 FAM186AA6NE01 2351 aa19.55■□□□□ 0.72
CLN3-214ENST00000565140 TRIM49BA6NDI0 452 aa19.55■□□□□ 0.72
CLN3-214ENST00000565140 KINO60870 393 aaKnown RBP19.55■□□□□ 0.72
CLN3-214ENST00000565140 CD44P16070 742 aaKnown RBP19.55■□□□□ 0.72
CLN3-214ENST00000565140 PTPRZ1P23471 2315 aaPredicted RBP19.55■□□□□ 0.72
CLN3-214ENST00000565140 CCNE1P24864 410 aa19.55■□□□□ 0.72
CLN3-214ENST00000565140 NBL1P41271 181 aa19.55■□□□□ 0.72
CLN3-214ENST00000565140 KPNA1P52294 538 aaPredicted RBP19.55■□□□□ 0.72
CLN3-214ENST00000565140 NDST1P52848 882 aa19.55■□□□□ 0.72
CLN3-214ENST00000565140 MLLT6P55198 1093 aaPredicted RBP19.55■□□□□ 0.72
CLN3-214ENST00000565140 NOP14P78316 857 aaKnown RBP19.55■□□□□ 0.72
CLN3-214ENST00000565140 FRMD5Q7Z6J6 570 aa19.55■□□□□ 0.72
CLN3-214ENST00000565140 ZC3H3Q8IXZ2 948 aaKnown RBP19.55■□□□□ 0.72
CLN3-214ENST00000565140 ARL14EPQ8N8R7 260 aaPredicted RBP19.55■□□□□ 0.72
CLN3-214ENST00000565140 KCNK16Q96T55 309 aa19.55■□□□□ 0.72
CLN3-214ENST00000565140 TTLL2Q9BWV7 592 aa19.55■□□□□ 0.72
CLN3-214ENST00000565140 TMEM8AQ9HCN3 771 aa19.55■□□□□ 0.72
CLN3-214ENST00000565140 GCNT4Q9P109 453 aa19.55■□□□□ 0.72
CLN3-214ENST00000565140 MAN1B1Q9UKM7 699 aa19.55■□□□□ 0.72
CLN3-214ENST00000565140 FRYLO94915 3013 aa19.55■□□□□ 0.72
CLN3-214ENST00000565140 PROB1E7EW31 1015 aa19.54■□□□□ 0.72
CLN3-214ENST00000565140 BMP6P22004 513 aa19.54■□□□□ 0.72
CLN3-214ENST00000565140 GTF2H1P32780 548 aa19.54■□□□□ 0.72
CLN3-214ENST00000565140 RPS9P46781 194 aaKnown RBP19.54■□□□□ 0.72
CLN3-214ENST00000565140 PLCB2Q00722 1185 aa19.54■□□□□ 0.72
CLN3-214ENST00000565140 ZNF268Q14587 947 aaPredicted RBP19.54■□□□□ 0.72
CLN3-214ENST00000565140 FUKQ8N0W3 1084 aa19.54■□□□□ 0.72
CLN3-214ENST00000565140 CRYBG2Q8N1P7 616 aa19.54■□□□□ 0.72
CLN3-214ENST00000565140 C12orf29Q8N999 325 aa19.54■□□□□ 0.72
CLN3-214ENST00000565140 SEMA4DQ92854 862 aa19.54■□□□□ 0.72
CLN3-214ENST00000565140 TNIP3Q96KP6 325 aa19.54■□□□□ 0.72
CLN3-214ENST00000565140 FAM83CQ9BQN1 747 aa19.54■□□□□ 0.72
CLN3-214ENST00000565140 MED10Q9BTT4 135 aa19.54■□□□□ 0.72
CLN3-214ENST00000565140 SPATA6Q9NWH7 488 aaPredicted RBP19.54■□□□□ 0.72
CLN3-214ENST00000565140 THG1LQ9NWX6 298 aaKnown RBP19.54■□□□□ 0.72
CLN3-214ENST00000565140 ZNF292O60281 2723 aa19.54■□□□□ 0.72
CLN3-214ENST00000565140 TRAV19A0A0A6YYK7 116 aa19.53■□□□□ 0.72
CLN3-214ENST00000565140 OTOL1A6NHN0 477 aaPredicted RBP19.53■□□□□ 0.72
CLN3-214ENST00000565140 NCAM2O15394 837 aa19.53■□□□□ 0.72
CLN3-214ENST00000565140 USP17L7P0C7H9 530 aa19.53■□□□□ 0.72
CLN3-214ENST00000565140 SP9P0CG40 484 aa19.53■□□□□ 0.72
CLN3-214ENST00000565140 EPB41P11171 864 aaKnown RBP19.53■□□□□ 0.72
CLN3-214ENST00000565140 CCDC130P13994 396 aa19.53■□□□□ 0.72
CLN3-214ENST00000565140 FKBP3Q00688 224 aaKnown RBP19.53■□□□□ 0.72
CLN3-214ENST00000565140 WDR44Q5JSH3 913 aa19.53■□□□□ 0.72
CLN3-214ENST00000565140 KRT39Q6A163 491 aa19.53■□□□□ 0.72
CLN3-214ENST00000565140 TRIM68Q6AZZ1 485 aa19.53■□□□□ 0.72
CLN3-214ENST00000565140 TXNDC11Q6PKC3 985 aa19.53■□□□□ 0.72
CLN3-214ENST00000565140 FAM35AQ86V20 835 aa19.53■□□□□ 0.72
CLN3-214ENST00000565140 UNC93AQ86WB7 457 aa19.53■□□□□ 0.72
CLN3-214ENST00000565140 TWNKQ96RR1 684 aa19.53■□□□□ 0.72
CLN3-214ENST00000565140 TSG101Q99816 390 aa19.53■□□□□ 0.72
CLN3-214ENST00000565140 C8orf33Q9H7E9 229 aaPredicted RBP19.53■□□□□ 0.72
CLN3-214ENST00000565140 KIF9Q9HAQ2 790 aa19.53■□□□□ 0.72
CLN3-214ENST00000565140 LMAN1LQ9HAT1 526 aa19.53■□□□□ 0.72
CLN3-214ENST00000565140 HPS4Q9NQG7 708 aa19.53■□□□□ 0.72
CLN3-214ENST00000565140 TRPM5Q9NZQ8 1165 aa19.53■□□□□ 0.72
CLN3-214ENST00000565140 MYOFQ9NZM1 2061 aa19.53■□□□□ 0.72
CLN3-214ENST00000565140 CFAP54Q96N23 3096 aa19.53■□□□□ 0.72
CLN3-214ENST00000565140 ZNF840PA6NDX5 716 aa19.52■□□□□ 0.72
CLN3-214ENST00000565140 SPECC1L-ADORA2AF8WAN1 911 aa19.52■□□□□ 0.72
CLN3-214ENST00000565140 CKMP06732 381 aa19.52■□□□□ 0.72
CLN3-214ENST00000565140 CHRNB1P11230 501 aa19.52■□□□□ 0.72
CLN3-214ENST00000565140 HDCP19113 662 aa19.52■□□□□ 0.72
CLN3-214ENST00000565140 CTHP32929 405 aa19.52■□□□□ 0.72
CLN3-214ENST00000565140 MAGEA9P43362 315 aa19.52■□□□□ 0.72
CLN3-214ENST00000565140 INCA1Q0VD86 236 aa19.52■□□□□ 0.72
CLN3-214ENST00000565140 IFRD2Q12894 506 aaPredicted RBP19.52■□□□□ 0.72
CLN3-214ENST00000565140 TAF10Q12962 218 aa19.52■□□□□ 0.72
CLN3-214ENST00000565140 NUP93Q8N1F7 819 aa19.52■□□□□ 0.72
CLN3-214ENST00000565140 SCAMP5Q8TAC9 235 aa19.52■□□□□ 0.72
CLN3-214ENST00000565140 SLC2A14Q8TDB8 520 aa19.52■□□□□ 0.72
CLN3-214ENST00000565140 GTPBP4Q9BZE4 634 aaKnown RBP19.52■□□□□ 0.72
CLN3-214ENST00000565140 IMPG2Q9BZV3 1241 aa19.52■□□□□ 0.72
CLN3-214ENST00000565140 NIF3L1Q9GZT8 377 aa19.52■□□□□ 0.72
CLN3-214ENST00000565140 EBF3Q9H4W6 596 aa19.52■□□□□ 0.72
CLN3-214ENST00000565140 EP300Q09472 2414 aaPredicted RBP19.52■□□□□ 0.71
CLN3-214ENST00000565140 MYO16Q9Y6X6 1858 aa19.52■□□□□ 0.71
CLN3-214ENST00000565140 PPP1R3GB7ZBB8 358 aa19.51■□□□□ 0.71
CLN3-214ENST00000565140 TNFRSF10BO14763 440 aa19.51■□□□□ 0.71
CLN3-214ENST00000565140 SLC16A3O15427 465 aaKnown RBP19.51■□□□□ 0.71
CLN3-214ENST00000565140 AP1G2O75843 785 aa19.51■□□□□ 0.71
CLN3-214ENST00000565140 BEST1O76090 585 aa19.51■□□□□ 0.71
CLN3-214ENST00000565140 ZXDBP98169 803 aa19.51■□□□□ 0.71
CLN3-214ENST00000565140 LRRC63Q05C16 580 aa19.51■□□□□ 0.71
CLN3-214ENST00000565140 MTAPQ13126 283 aa19.51■□□□□ 0.71
CLN3-214ENST00000565140 ZNF77Q15935 545 aa19.51■□□□□ 0.71
CLN3-214ENST00000565140 ITPRIPL2Q3MIP1 535 aa19.51■□□□□ 0.71
CLN3-214ENST00000565140 CBWD6Q4V339 395 aa19.51■□□□□ 0.71
CLN3-214ENST00000565140 CBWD3Q5JTY5 395 aa19.51■□□□□ 0.71
CLN3-214ENST00000565140 CBWD5Q5RIA9 395 aa19.51■□□□□ 0.71
CLN3-214ENST00000565140 RALGPS2Q86X27 583 aaPredicted RBP19.51■□□□□ 0.71
CLN3-214ENST00000565140 TTC16Q8NEE8 873 aa19.51■□□□□ 0.71
CLN3-214ENST00000565140 ZMIZ2Q8NF64 920 aa19.51■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms