RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 MLF2Q15773 248 aaPredicted RBP14.22□□□□□ -0.13
CLK3-213ENST00000563842 CBWD6Q4V339 395 aa14.22□□□□□ -0.13
CLK3-213ENST00000563842 ARHGAP29Q52LW3 1261 aa14.22□□□□□ -0.13
CLK3-213ENST00000563842 CBWD3Q5JTY5 395 aa14.22□□□□□ -0.13
CLK3-213ENST00000563842 CBWD5Q5RIA9 395 aa14.22□□□□□ -0.13
CLK3-213ENST00000563842 TMEM150AQ86TG1 271 aa14.22□□□□□ -0.13
CLK3-213ENST00000563842 FAM35AQ86V20 835 aa14.22□□□□□ -0.13
CLK3-213ENST00000563842 NUP93Q8N1F7 819 aa14.22□□□□□ -0.13
CLK3-213ENST00000563842 MAB21L3Q8N8X9 362 aa14.22□□□□□ -0.13
CLK3-213ENST00000563842 SEMA4DQ92854 862 aa14.22□□□□□ -0.13
CLK3-213ENST00000563842 SLITRK1Q96PX8 696 aa14.22□□□□□ -0.13
CLK3-213ENST00000563842 TTLL2Q9BWV7 592 aa14.22□□□□□ -0.13
CLK3-213ENST00000563842 SRRTQ9BXP5 876 aaKnown RBP14.22□□□□□ -0.13
CLK3-213ENST00000563842 SLC46A2Q9BY10 475 aa14.22□□□□□ -0.13
CLK3-213ENST00000563842 ZNF518BQ9C0D4 1074 aa14.22□□□□□ -0.13
CLK3-213ENST00000563842 IRF2BPLQ9H1B7 796 aa14.22□□□□□ -0.13
CLK3-213ENST00000563842 THG1LQ9NWX6 298 aaKnown RBP14.22□□□□□ -0.13
CLK3-213ENST00000563842 COMMD8Q9NX08 183 aa14.22□□□□□ -0.13
CLK3-213ENST00000563842 KIF26AQ9ULI4 1882 aaPredicted RBP14.22□□□□□ -0.13
CLK3-213ENST00000563842 PATJQ8NI35 1801 aa14.22□□□□□ -0.13
CLK3-213ENST00000563842 MYO16Q9Y6X6 1858 aa14.21□□□□□ -0.13
CLK3-213ENST00000563842 TRAV19A0A0A6YYK7 116 aa14.21□□□□□ -0.13
CLK3-213ENST00000563842 CLDN5O00501 218 aa14.21□□□□□ -0.13
CLK3-213ENST00000563842 CILPO75339 1184 aa14.21□□□□□ -0.13
CLK3-213ENST00000563842 AP1G2O75843 785 aa14.21□□□□□ -0.13
CLK3-213ENST00000563842 USP17L7P0C7H9 530 aa14.21□□□□□ -0.13
CLK3-213ENST00000563842 GLULP15104 373 aa14.21□□□□□ -0.13
CLK3-213ENST00000563842 CD58P19256 250 aa14.21□□□□□ -0.13
CLK3-213ENST00000563842 TBXAS1P24557 533 aaPredicted RBP14.21□□□□□ -0.13
CLK3-213ENST00000563842 PLCB2Q00722 1185 aa14.21□□□□□ -0.13
CLK3-213ENST00000563842 FCHO2Q0JRZ9 810 aa14.21□□□□□ -0.13
CLK3-213ENST00000563842 GRM2Q14416 872 aa14.21□□□□□ -0.13
CLK3-213ENST00000563842 TPD52L1Q16890 204 aaPredicted RBP14.21□□□□□ -0.13
CLK3-213ENST00000563842 FUKQ8N0W3 1084 aa14.21□□□□□ -0.13
CLK3-213ENST00000563842 STKLD1Q8NE28 680 aa14.21□□□□□ -0.13
CLK3-213ENST00000563842 PDZD8Q8NEN9 1154 aa14.21□□□□□ -0.13
CLK3-213ENST00000563842 BPIFB1Q8TDL5 484 aa14.21□□□□□ -0.13
CLK3-213ENST00000563842 CSGALNACT1Q8TDX6 532 aa14.21□□□□□ -0.13
CLK3-213ENST00000563842 NELL2Q99435 816 aa14.21□□□□□ -0.13
CLK3-213ENST00000563842 TBC1D17Q9HA65 648 aa14.21□□□□□ -0.13
CLK3-213ENST00000563842 TDP1Q9NUW8 608 aa14.21□□□□□ -0.13
CLK3-213ENST00000563842 MRPS17Q9Y2R5 130 aaKnown RBP14.21□□□□□ -0.13
CLK3-213ENST00000563842 UTP18Q9Y5J1 556 aaKnown RBP eCLIP14.21□□□□□ -0.13
CLK3-213ENST00000563842 MAN2B1O00754 1011 aa14.2□□□□□ -0.14
CLK3-213ENST00000563842 FAM200BP0CF97 657 aa14.2□□□□□ -0.14
CLK3-213ENST00000563842 NPR3P17342 541 aa14.2□□□□□ -0.14
CLK3-213ENST00000563842 YWHAQP27348 245 aa14.2□□□□□ -0.14
CLK3-213ENST00000563842 VCPP55072 806 aaKnown RBP14.2□□□□□ -0.14
CLK3-213ENST00000563842 MLLT6P55198 1093 aaPredicted RBP14.2□□□□□ -0.14
CLK3-213ENST00000563842 KCNH2Q12809 1159 aa14.2□□□□□ -0.14
CLK3-213ENST00000563842 ZNF268Q14587 947 aaPredicted RBP14.2□□□□□ -0.14
CLK3-213ENST00000563842 CT47A1Q5JQC4 288 aaPredicted RBP14.2□□□□□ -0.14
CLK3-213ENST00000563842 TXNDC8Q6A555 127 aa14.2□□□□□ -0.14
CLK3-213ENST00000563842 C1orf228Q6PIY5 440 aa14.2□□□□□ -0.14
CLK3-213ENST00000563842 PAQR9Q6ZVX9 377 aa14.2□□□□□ -0.14
CLK3-213ENST00000563842 TRIM59Q8IWR1 403 aa14.2□□□□□ -0.14
CLK3-213ENST00000563842 SLC2A14Q8TDB8 520 aa14.2□□□□□ -0.14
CLK3-213ENST00000563842 OVCA2Q8WZ82 227 aa14.2□□□□□ -0.14
CLK3-213ENST00000563842 CYFIP2Q96F07 1278 aa14.2□□□□□ -0.14
CLK3-213ENST00000563842 MSANTD3Q96H12 275 aa14.2□□□□□ -0.14
CLK3-213ENST00000563842 NT5C1BQ96P26 610 aa14.2□□□□□ -0.14
CLK3-213ENST00000563842 HNRNPABQ99729 332 aaKnown RBP14.2□□□□□ -0.14
CLK3-213ENST00000563842 OSBPL6Q9BZF3 934 aa14.2□□□□□ -0.14
CLK3-213ENST00000563842 CSNK1G1Q9HCP0 422 aa14.2□□□□□ -0.14
CLK3-213ENST00000563842 TRPC7Q9HCX4 862 aa14.2□□□□□ -0.14
CLK3-213ENST00000563842 KRT82Q9NSB4 513 aa14.2□□□□□ -0.14
CLK3-213ENST00000563842 CISHQ9NSE2 258 aa14.2□□□□□ -0.14
CLK3-213ENST00000563842 FAM49BQ9NUQ9 324 aa14.2□□□□□ -0.14
CLK3-213ENST00000563842 HMGXB4Q9UGU5 601 aa14.2□□□□□ -0.14
CLK3-213ENST00000563842 KANSL1LA0AUZ9 987 aa14.19□□□□□ -0.14
CLK3-213ENST00000563842 NCAM2O15394 837 aa14.19□□□□□ -0.14
CLK3-213ENST00000563842 TADA3O75528 432 aa14.19□□□□□ -0.14
CLK3-213ENST00000563842 AFPP02771 609 aaKnown RBP14.19□□□□□ -0.14
CLK3-213ENST00000563842 CKMP06732 381 aa14.19□□□□□ -0.14
CLK3-213ENST00000563842 CCDC130P13994 396 aa14.19□□□□□ -0.14
CLK3-213ENST00000563842 HDCP19113 662 aa14.19□□□□□ -0.14
CLK3-213ENST00000563842 ERCC5P28715 1186 aaPredicted RBP14.19□□□□□ -0.14
CLK3-213ENST00000563842 ORC1Q13415 861 aa14.19□□□□□ -0.14
CLK3-213ENST00000563842 CUL2Q13617 745 aa14.19□□□□□ -0.14
CLK3-213ENST00000563842 CWF19L1Q69YN2 538 aaKnown RBP14.19□□□□□ -0.14
CLK3-213ENST00000563842 ZNF852Q6ZMS4 543 aa14.19□□□□□ -0.14
CLK3-213ENST00000563842 TPRG1Q6ZUI0 275 aa14.19□□□□□ -0.14
CLK3-213ENST00000563842 FAM114A1Q8IWE2 563 aa14.19□□□□□ -0.14
CLK3-213ENST00000563842 C12orf29Q8N999 325 aa14.19□□□□□ -0.14
CLK3-213ENST00000563842 WHAMMQ8TF30 809 aa14.19□□□□□ -0.14
CLK3-213ENST00000563842 TATDN2Q93075 761 aa14.19□□□□□ -0.14
CLK3-213ENST00000563842 FBXO32Q969P5 355 aa14.19□□□□□ -0.14
CLK3-213ENST00000563842 TMEM176AQ96HP8 235 aa14.19□□□□□ -0.14
CLK3-213ENST00000563842 HEXIM2Q96MH2 286 aaKnown RBP14.19□□□□□ -0.14
CLK3-213ENST00000563842 KCNK16Q96T55 309 aa14.19□□□□□ -0.14
CLK3-213ENST00000563842 FBXO44Q9H4M3 255 aa14.19□□□□□ -0.14
CLK3-213ENST00000563842 PNPLA8Q9NP80 782 aa14.19□□□□□ -0.14
CLK3-213ENST00000563842 SIT1Q9Y3P8 196 aa14.19□□□□□ -0.14
CLK3-213ENST00000563842 LRRN2O75325 713 aa14.18□□□□□ -0.14
CLK3-213ENST00000563842 PRAMEF12O95522 483 aa14.18□□□□□ -0.14
CLK3-213ENST00000563842 MBD3O95983 291 aa14.18□□□□□ -0.14
CLK3-213ENST00000563842 ADORA2BP29275 332 aa14.18□□□□□ -0.14
CLK3-213ENST00000563842 MAGEA9P43362 315 aa14.18□□□□□ -0.14
CLK3-213ENST00000563842 CACNA2D1P54289 1103 aa14.18□□□□□ -0.14
CLK3-213ENST00000563842 PTPN5P54829 565 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 74.2 ms