RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 GOLGA6AQ9NYA3 693 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 EHD2Q9NZN4 543 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 ASIC3Q9UHC3 531 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 NFU1Q9UMS0 254 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 USP18Q9UMW8 372 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 POLIQ9UNA4 740 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 SHOC2Q9UQ13 582 aa7.89□□□□□ -1.15
VPS39-204ENST00000561818 PDCD11Q14690 1871 aaKnown RBP7.89□□□□□ -1.15
VPS39-204ENST00000561818 LRRD1A4D1F6 860 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 C2CD4BA6NLJ0 364 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 CYB561D2O14569 222 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 NCAM2O15394 837 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 TTI1O43156 1089 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 MTSS1O43312 755 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 LRCH4O75427 683 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 SPAG6O75602 509 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 STK10O94804 968 aaKnown RBP7.88□□□□□ -1.15
VPS39-204ENST00000561818 SEC31AO94979 1220 aaKnown RBP7.88□□□□□ -1.15
VPS39-204ENST00000561818 PGK1P00558 417 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 RALAP11233 206 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 PDGFRAP16234 1089 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 ATP2A2P16615 1042 aaKnown RBP7.88□□□□□ -1.15
VPS39-204ENST00000561818 GRK4P32298 578 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 TMEM62Q0P6H9 643 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 NR1H3Q13133 447 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 ZNF211Q13398 564 aaPredicted RBP7.88□□□□□ -1.15
VPS39-204ENST00000561818 XRCC4Q13426 336 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 MORF4L2Q15014 288 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 NFE2Q16621 373 aaPredicted RBP7.88□□□□□ -1.15
VPS39-204ENST00000561818 TAZQ16635 292 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 SOWAHAQ2M3V2 549 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 ARL13BQ3SXY8 428 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 ARMC3Q5W041 872 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 OR6B2Q6IFH4 312 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 DCLRE1AQ6PJP8 1040 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 OLFML1Q6UWY5 402 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 SPOCD1Q6ZMY3 1216 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 TAOK1Q7L7X3 1001 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 TMC3Q7Z5M5 1100 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 CDR2LQ86X02 465 aaPredicted RBP7.88□□□□□ -1.15
VPS39-204ENST00000561818 ARHGAP18Q8N392 663 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 SLC43A3Q8NBI5 491 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 KCTD6Q8NC69 237 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 SMG8Q8ND04 991 aaKnown RBP7.88□□□□□ -1.15
VPS39-204ENST00000561818 TRPV1Q8NER1 839 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 TMEM40Q8WWA1 233 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 FUBP3Q96I24 572 aaKnown RBP eCLIP7.88□□□□□ -1.15
VPS39-204ENST00000561818 ZNF668Q96K58 619 aaPredicted RBP7.88□□□□□ -1.15
VPS39-204ENST00000561818 ZMAT2Q96NC0 199 aaKnown RBP7.88□□□□□ -1.15
VPS39-204ENST00000561818 CPXM1Q96SM3 734 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 PPP1R16BQ96T49 567 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 TMEM109Q9BVC6 243 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 DUSP16Q9BY84 665 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 PABPC3Q9H361 631 aaKnown RBP7.88□□□□□ -1.15
VPS39-204ENST00000561818 GOLPH3Q9H4A6 298 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 ACP6Q9NPH0 428 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 METTL5Q9NRN9 209 aaKnown RBP7.88□□□□□ -1.15
VPS39-204ENST00000561818 RGS18Q9NS28 235 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 TUBGCP4Q9UGJ1 667 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 PADI3Q9ULW8 664 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 PHF24Q9UPV7 400 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 UTRNP46939 3433 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 DOCK3Q8IZD9 2030 aa7.88□□□□□ -1.15
VPS39-204ENST00000561818 TRBV21OR9-2A0A075B6F4 123 aaPredicted RBP7.87□□□□□ -1.15
VPS39-204ENST00000561818 hCG_1818297A0A087WSY0 165 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 ARL5CA6NH57 179 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 HACD1B0YJ81 288 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 C9IYK1 514 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 E5RJQ4 531 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 ARVCFO00192 962 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 AP3B1O00203 1094 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 SYN3O14994 580 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 LIASO43766 372 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 EFCAB14O75071 495 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 RNF40O75150 1001 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 CSDE1O75534 798 aaKnown RBP7.87□□□□□ -1.15
VPS39-204ENST00000561818 DAB1O75553 588 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 ABHD2P08910 425 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 RARAP10276 462 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 SELPP16109 830 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 AKAP5P24588 427 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 NOS2P35228 1153 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 PHBP35232 272 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 RFC1P35251 1148 aaPredicted RBP7.87□□□□□ -1.15
VPS39-204ENST00000561818 ARL4AP40617 200 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 MATKP42679 507 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 CDKN2BP42772 138 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 RAP1GAPP47736 663 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 CARSP49589 748 aaKnown RBP7.87□□□□□ -1.15
VPS39-204ENST00000561818 VCPP55072 806 aaKnown RBP7.87□□□□□ -1.15
VPS39-204ENST00000561818 CDH8P55286 799 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 RNASE9P60153 205 aaKnown RBP7.87□□□□□ -1.15
VPS39-204ENST00000561818 SARNPP82979 210 aaKnown RBP7.87□□□□□ -1.15
VPS39-204ENST00000561818 SLC7A5Q01650 507 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 SLC25A11Q02978 314 aaKnown RBP7.87□□□□□ -1.15
VPS39-204ENST00000561818 KRT17Q04695 432 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 KRT81Q14533 505 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 DSC3Q14574 896 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 C6orf118Q5T5N4 469 aa7.87□□□□□ -1.15
VPS39-204ENST00000561818 PPP1R26Q5T8A7 1209 aaPredicted RBP7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 33.3 ms