RNA–Protein interactions for RNA: ENST00000561253.5

LRRC28-220, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 574 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-220ENST00000561253 CALM1P0DP23 149 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 CALM2P0DP24 149 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 CALM3P0DP25 149 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 IFNAR1P17181 557 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 TXKP42681 527 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 MEOX1P50221 254 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 STAT5BP51692 787 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 NRG3P56975 720 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 NFE2Q16621 373 aaPredicted RBP6.82□□□□□ -1.32
LRRC28-220ENST00000561253 QRICH1Q2TAL8 776 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 GAREM2Q75VX8 874 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 SLC41A1Q8IVJ1 513 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 GLB1L2Q8IW92 636 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 REXO1L1PQ8IX06 675 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 GPRC5AQ8NFJ5 357 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 CD99L2Q8TCZ2 262 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 ADAMTS17Q8TE56 1095 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 TEKT5Q96M29 485 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 WDR92Q96MX6 357 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 PAGR1Q9BTK6 254 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 HAPLN2Q9GZV7 340 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 IFT122Q9HBG6 1241 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 RAVER2Q9HCJ3 691 aaKnown RBP6.82□□□□□ -1.32
LRRC28-220ENST00000561253 ZIM2Q9NZV7 527 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 EVLQ9UI08 416 aaPredicted RBP6.82□□□□□ -1.32
LRRC28-220ENST00000561253 ZNF180Q9UJW8 692 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 RANBP2P49792 3224 aaKnown RBP6.82□□□□□ -1.32
LRRC28-220ENST00000561253 CASP8AP2Q9UKL3 1982 aa6.82□□□□□ -1.32
LRRC28-220ENST00000561253 PLXNB2O15031 1838 aa6.81□□□□□ -1.32
LRRC28-220ENST00000561253 COL11A1P12107 1806 aaPredicted RBP6.81□□□□□ -1.32
LRRC28-220ENST00000561253 LOC100996750A0A140TA64 210 aa6.81□□□□□ -1.32
LRRC28-220ENST00000561253 ZBTB5O15062 677 aa6.81□□□□□ -1.32
LRRC28-220ENST00000561253 PARNO95453 639 aaKnown RBP6.81□□□□□ -1.32
LRRC28-220ENST00000561253 HOXC6P09630 235 aa6.81□□□□□ -1.32
LRRC28-220ENST00000561253 KIF5BP33176 963 aa6.81□□□□□ -1.32
LRRC28-220ENST00000561253 GNAQP50148 359 aa6.81□□□□□ -1.32
LRRC28-220ENST00000561253 METAP2P50579 478 aaKnown RBP eCLIP6.81□□□□□ -1.32
LRRC28-220ENST00000561253 CCT2P78371 535 aaKnown RBP6.81□□□□□ -1.32
LRRC28-220ENST00000561253 GRB14Q14449 540 aa6.81□□□□□ -1.32
LRRC28-220ENST00000561253 ODF1Q14990 250 aa6.81□□□□□ -1.32
LRRC28-220ENST00000561253 PPP2R5BQ15173 497 aa6.81□□□□□ -1.32
LRRC28-220ENST00000561253 CDC37Q16543 378 aaPredicted RBP6.81□□□□□ -1.32
LRRC28-220ENST00000561253 MAN2A1Q16706 1144 aa6.81□□□□□ -1.32
LRRC28-220ENST00000561253 MUM1L1Q5H9M0 696 aa6.81□□□□□ -1.32
LRRC28-220ENST00000561253 FAM26FQ5R3K3 315 aa6.81□□□□□ -1.32
LRRC28-220ENST00000561253 MBNL2Q5VZF2 373 aaKnown RBP6.81□□□□□ -1.32
LRRC28-220ENST00000561253 SNRNP48Q6IEG0 339 aaKnown RBP6.81□□□□□ -1.32
LRRC28-220ENST00000561253 GPR142Q7Z601 462 aa6.81□□□□□ -1.32
LRRC28-220ENST00000561253 FMNL3Q8IVF7 1028 aa6.81□□□□□ -1.32
LRRC28-220ENST00000561253 ABRAQ8N0Z2 381 aa6.81□□□□□ -1.32
LRRC28-220ENST00000561253 BCL6BQ8N143 479 aaPredicted RBP6.81□□□□□ -1.32
LRRC28-220ENST00000561253 CTCFLQ8NI51 663 aaPredicted RBP6.81□□□□□ -1.32
LRRC28-220ENST00000561253 NUP133Q8WUM0 1156 aa6.81□□□□□ -1.32
LRRC28-220ENST00000561253 JADE3Q92613 823 aa6.81□□□□□ -1.32
LRRC28-220ENST00000561253 GTF3C6Q969F1 213 aa6.81□□□□□ -1.32
LRRC28-220ENST00000561253 SLC2A13Q96QE2 648 aa6.81□□□□□ -1.32
LRRC28-220ENST00000561253 PIGSQ96S52 555 aa6.81□□□□□ -1.32
LRRC28-220ENST00000561253 LZTS2Q9BRK4 669 aa6.81□□□□□ -1.32
LRRC28-220ENST00000561253 ACE2Q9BYF1 805 aaPredicted RBP6.81□□□□□ -1.32
LRRC28-220ENST00000561253 KRTAP4-6Q9BYQ5 205 aa6.81□□□□□ -1.32
LRRC28-220ENST00000561253 KATNBL1Q9H079 304 aa6.81□□□□□ -1.32
LRRC28-220ENST00000561253 RBM28Q9NW13 759 aaKnown RBP6.81□□□□□ -1.32
LRRC28-220ENST00000561253 SLTMQ9NWH9 1034 aaKnown RBP eCLIP6.81□□□□□ -1.32
LRRC28-220ENST00000561253 ZDHHC9Q9Y397 364 aa6.81□□□□□ -1.32
LRRC28-220ENST00000561253 ZNF236Q9UL36 1845 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 hCG_1642624A0A1W2PR95 340 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 C9orf118A6NHY6 69 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 ADAMTS3O15072 1205 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 CEP290O15078 2479 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 ZBED4O75132 1171 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 FSBPO95073 299 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 SLC25A27O95847 323 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 FDPSP14324 419 aaKnown RBP6.8□□□□□ -1.32
LRRC28-220ENST00000561253 ZSCAN20P17040 1043 aaPredicted RBP6.8□□□□□ -1.32
LRRC28-220ENST00000561253 MAPK4P31152 587 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 PSMC4P43686 418 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 SESN2P58004 480 aaPredicted RBP6.8□□□□□ -1.32
LRRC28-220ENST00000561253 PRKCZQ05513 592 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 ANKRD1Q15327 319 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 NPY5RQ15761 445 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 ANO4Q32M45 955 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 TMEM240Q5SV17 173 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 KLHDC10Q6PID8 442 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 KLHL36Q8N4N3 616 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 CPA6Q8N4T0 437 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 FAM133AQ8N9E0 248 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 NSUN7Q8NE18 718 aaKnown RBP6.8□□□□□ -1.32
LRRC28-220ENST00000561253 CHST13Q8NET6 341 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 TSPEARQ8WU66 669 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 TBC1D5Q92609 795 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 FATE1Q969F0 183 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 GFM2Q969S9 779 aaKnown RBP6.8□□□□□ -1.32
LRRC28-220ENST00000561253 ERO1AQ96HE7 468 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 AJUBAQ96IF1 538 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 LCORQ96JN0 433 aaPredicted RBP6.8□□□□□ -1.32
LRRC28-220ENST00000561253 CDH19Q9H159 772 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 MROH8Q9H579 483 aa6.8□□□□□ -1.32
LRRC28-220ENST00000561253 UPF2Q9HAU5 1272 aaKnown RBP6.8□□□□□ -1.32
LRRC28-220ENST00000561253 A1CFQ9NQ94 594 aaKnown RBP6.8□□□□□ -1.32
LRRC28-220ENST00000561253 SRRDQ9UH36 339 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms