RNA–Protein interactions for RNA: ENST00000561242.1

TPM1-229, Transcript of tropomyosin 1, humanhuman

TSL 2

Gene TPM1, Length 673 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TPM1-229ENST00000561242 RTN4Q9NQC3 1192 aaKnown RBP11.32□□□□□ -0.6
TPM1-229ENST00000561242 TMLHEQ9NVH6 421 aa11.32□□□□□ -0.6
TPM1-229ENST00000561242 DNMT3BQ9UBC3 853 aaKnown RBP11.32□□□□□ -0.6
TPM1-229ENST00000561242 TSPAN16Q9UKR8 245 aa11.32□□□□□ -0.6
TPM1-229ENST00000561242 STRIP2Q9ULQ0 834 aa11.32□□□□□ -0.6
TPM1-229ENST00000561242 A0A1W2PQC6 194 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 A0A1W2PRU2 124 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 CYP26A1O43174 497 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 NRDCO43847 1150 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 CKMP06732 381 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 USP17L7P0C7H9 530 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 ATP1A3P13637 1013 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 ZNF18P17022 549 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 TNFAIP3P21580 790 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 KCNQ1P51787 676 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 AMPD2Q01433 879 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 KCNC3Q14003 757 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 COL19A1Q14993 1142 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 NCAPHQ15003 741 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 ASIC2Q16515 512 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 MIIPQ5JXC2 388 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 SFMBT2Q5VUG0 894 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 SDHAF4Q5VUM1 108 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 BTBD8Q5XKL5 378 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 DDX42Q86XP3 938 aaKnown RBP eCLIP11.31□□□□□ -0.6
TPM1-229ENST00000561242 ZNF677Q86XU0 584 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 UBA3Q8TBC4 463 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 ADAMTS19Q8TE59 1207 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 CPLX3Q8WVH0 158 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 ING5Q8WYH8 240 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 OVCA2Q8WZ82 227 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 ERGIC2Q96RQ1 377 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 DEF6Q9H4E7 631 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 POMKQ9H5K3 350 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 TASP1Q9H6P5 420 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 PNPLA8Q9NP80 782 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 CEP72Q9P209 647 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 IGSF9Q9P2J2 1179 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 FBXL21Q9UKT6 434 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 LUC7L2Q9Y383 392 aaKnown RBP11.31□□□□□ -0.6
TPM1-229ENST00000561242 MKI67P46013 3256 aaKnown RBP11.31□□□□□ -0.6
TPM1-229ENST00000561242 RALGAPA2Q2PPJ7 1873 aa11.31□□□□□ -0.6
TPM1-229ENST00000561242 DNAH12Q6ZR08 3092 aa11.3□□□□□ -0.6
TPM1-229ENST00000561242 SOBPA7XYQ1 873 aa11.3□□□□□ -0.6
TPM1-229ENST00000561242 FOXN3O00409 490 aaPredicted RBP11.3□□□□□ -0.6
TPM1-229ENST00000561242 XPO1O14980 1071 aaKnown RBP11.3□□□□□ -0.6
TPM1-229ENST00000561242 HCRTO43612 131 aa11.3□□□□□ -0.6
TPM1-229ENST00000561242 GFPT2O94808 682 aa11.3□□□□□ -0.6
TPM1-229ENST00000561242 FBXO21O94952 628 aa11.3□□□□□ -0.6
TPM1-229ENST00000561242 ALADP13716 330 aa11.3□□□□□ -0.6
TPM1-229ENST00000561242 LCP1P13796 627 aa11.3□□□□□ -0.6
TPM1-229ENST00000561242 IL9P15248 144 aa11.3□□□□□ -0.6
TPM1-229ENST00000561242 PFKLP17858 780 aa11.3□□□□□ -0.6
TPM1-229ENST00000561242 HDCP19113 662 aa11.3□□□□□ -0.6
TPM1-229ENST00000561242 BRD2P25440 801 aaKnown RBP11.3□□□□□ -0.6
TPM1-229ENST00000561242 SOX5P35711 763 aa11.3□□□□□ -0.6
TPM1-229ENST00000561242 NR1H3Q13133 447 aa11.3□□□□□ -0.6
TPM1-229ENST00000561242 HECTD3Q5T447 861 aa11.3□□□□□ -0.6
TPM1-229ENST00000561242 GJB7Q6PEY0 223 aa11.3□□□□□ -0.6
TPM1-229ENST00000561242 LCLAT1Q6UWP7 414 aa11.3□□□□□ -0.6
TPM1-229ENST00000561242 TRIM72Q6ZMU5 477 aa11.3□□□□□ -0.6
TPM1-229ENST00000561242 MON1AQ86VX9 555 aa11.3□□□□□ -0.6
TPM1-229ENST00000561242 FUKQ8N0W3 1084 aa11.3□□□□□ -0.6
TPM1-229ENST00000561242 LMO3Q8TAP4 145 aa11.3□□□□□ -0.6
TPM1-229ENST00000561242 TRMT2BQ96GJ1 504 aaKnown RBP11.3□□□□□ -0.6
TPM1-229ENST00000561242 HNRNPUL1Q9BUJ2 856 aaKnown RBP eCLIP11.3□□□□□ -0.6
TPM1-229ENST00000561242 EDEM3Q9BZQ6 932 aa11.3□□□□□ -0.6
TPM1-229ENST00000561242 AVENQ9NQS1 362 aaPredicted RBP11.3□□□□□ -0.6
TPM1-229ENST00000561242 HCFC1R1Q9NWW0 138 aa11.3□□□□□ -0.6
TPM1-229ENST00000561242 LIMD1Q9UGP4 676 aa11.3□□□□□ -0.6
TPM1-229ENST00000561242 NAGPAQ9UK23 515 aa11.3□□□□□ -0.6
TPM1-229ENST00000561242 LSM7Q9UK45 103 aaKnown RBP11.3□□□□□ -0.6
TPM1-229ENST00000561242 MYO6Q9UM54 1294 aa11.3□□□□□ -0.6
TPM1-229ENST00000561242 SH3BP1Q9Y3L3 701 aa11.3□□□□□ -0.6
TPM1-229ENST00000561242 BZW2Q9Y6E2 419 aaKnown RBP11.3□□□□□ -0.6
TPM1-229ENST00000561242 TDRD15B5MCY1 1934 aaKnown RBP11.29□□□□□ -0.6
TPM1-229ENST00000561242 A0A1B0GTH6 734 aa11.29□□□□□ -0.6
TPM1-229ENST00000561242 NOL4O94818 638 aa11.29□□□□□ -0.6
TPM1-229ENST00000561242 MBL2P11226 248 aaPredicted RBP11.29□□□□□ -0.6
TPM1-229ENST00000561242 LAMP2P13473 410 aa11.29□□□□□ -0.6
TPM1-229ENST00000561242 GPR15P49685 360 aa11.29□□□□□ -0.6
TPM1-229ENST00000561242 TKTL1P51854 596 aa11.29□□□□□ -0.6
TPM1-229ENST00000561242 SLC5A3P53794 718 aa11.29□□□□□ -0.6
TPM1-229ENST00000561242 NTHL1P78549 312 aa11.29□□□□□ -0.6
TPM1-229ENST00000561242 PFKPQ01813 784 aa11.29□□□□□ -0.6
TPM1-229ENST00000561242 TAF10Q12962 218 aa11.29□□□□□ -0.6
TPM1-229ENST00000561242 NR1I3Q14994 352 aa11.29□□□□□ -0.6
TPM1-229ENST00000561242 TEAD2Q15562 447 aa11.29□□□□□ -0.6
TPM1-229ENST00000561242 TDRD12Q587J7 1177 aaKnown RBP11.29□□□□□ -0.6
TPM1-229ENST00000561242 SCARA3Q6AZY7 606 aa11.29□□□□□ -0.6
TPM1-229ENST00000561242 CCDC117Q8IWD4 279 aaPredicted RBP11.29□□□□□ -0.6
TPM1-229ENST00000561242 ZDHHC14Q8IZN3 488 aa11.29□□□□□ -0.6
TPM1-229ENST00000561242 HS6ST3Q8IZP7 471 aa11.29□□□□□ -0.6
TPM1-229ENST00000561242 TTC9BQ8N6N2 239 aa11.29□□□□□ -0.6
TPM1-229ENST00000561242 MAB21L3Q8N8X9 362 aa11.29□□□□□ -0.6
TPM1-229ENST00000561242 CSGALNACT1Q8TDX6 532 aa11.29□□□□□ -0.6
TPM1-229ENST00000561242 ZNF606Q8WXB4 792 aa11.29□□□□□ -0.6
TPM1-229ENST00000561242 SHC3Q92529 594 aa11.29□□□□□ -0.6
TPM1-229ENST00000561242 SUSD6Q92537 303 aa11.29□□□□□ -0.6
TPM1-229ENST00000561242 FGF13Q92913 245 aa11.29□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms