RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 AADACL2Q6P093 401 aa5.71□□□□□ -1.49
VPS13C-209ENST00000560637 KCNT2Q6UVM3 1135 aa5.71□□□□□ -1.49
VPS13C-209ENST00000560637 LRRC31Q6UY01 552 aa5.71□□□□□ -1.49
VPS13C-209ENST00000560637 YAF2Q8IY57 180 aa5.71□□□□□ -1.49
VPS13C-209ENST00000560637 DEFB106AQ8N104 65 aa5.71□□□□□ -1.49
VPS13C-209ENST00000560637 MRPS31Q92665 395 aaKnown RBP5.71□□□□□ -1.49
VPS13C-209ENST00000560637 SNX27Q96L92 541 aa5.71□□□□□ -1.49
VPS13C-209ENST00000560637 MFSD14AQ96MC6 490 aa5.71□□□□□ -1.49
VPS13C-209ENST00000560637 NAP1L3Q99457 506 aaPredicted RBP5.71□□□□□ -1.49
VPS13C-209ENST00000560637 ELOVL4Q9GZR5 314 aa5.71□□□□□ -1.49
VPS13C-209ENST00000560637 PLEKHA5Q9HAU0 1116 aa5.71□□□□□ -1.49
VPS13C-209ENST00000560637 SPG21Q9NZD8 308 aa5.71□□□□□ -1.49
VPS13C-209ENST00000560637 TXNDC16Q9P2K2 825 aa5.71□□□□□ -1.49
VPS13C-209ENST00000560637 SFMBT1Q9UHJ3 866 aa5.71□□□□□ -1.49
VPS13C-209ENST00000560637 SNX24Q9Y343 169 aa5.71□□□□□ -1.49
VPS13C-209ENST00000560637 PPME1Q9Y570 386 aa5.71□□□□□ -1.49
VPS13C-209ENST00000560637 ZMYM2Q9UBW7 1377 aa5.71□□□□□ -1.49
VPS13C-209ENST00000560637 NCOR1O75376 2440 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 FAM47DPA6NHR8 397 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 ZBTB42B2RXF5 422 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 PGRMC1O00264 195 aaKnown RBP5.71□□□□□ -1.5
VPS13C-209ENST00000560637 HGSO14964 777 aaPredicted RBP5.71□□□□□ -1.5
VPS13C-209ENST00000560637 MCF2LO15068 1137 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 GPR32O75388 356 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 STK10O94804 968 aaKnown RBP5.71□□□□□ -1.5
VPS13C-209ENST00000560637 C4BPAP04003 597 aaKnown RBP5.71□□□□□ -1.5
VPS13C-209ENST00000560637 EPHB1P54762 984 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 TPI1P60174 286 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 NAB2Q15742 525 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 USP41Q3LFD5 358 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 VARS2Q5ST30 1063 aaKnown RBP5.71□□□□□ -1.5
VPS13C-209ENST00000560637 IL31Q6EBC2 164 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 WDR59Q6PJI9 974 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 B3GNT9Q6UX72 402 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 CHRDL2Q6WN34 429 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 C16orf59Q7L2K0 433 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 TTC30BQ8N4P2 665 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 C12orf76Q8N812 135 aaPredicted RBP5.71□□□□□ -1.5
VPS13C-209ENST00000560637 CCDC63Q8NA47 563 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 USP38Q8NB14 1042 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 SCAMP5Q8TAC9 235 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 TFAP2BQ92481 460 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 TMEM209Q96SK2 561 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 HSD3B7Q9H2F3 369 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 EPB41L5Q9HCM4 733 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 UBN1Q9NPG3 1134 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 PIH1D1Q9NWS0 290 aaKnown RBP5.71□□□□□ -1.5
VPS13C-209ENST00000560637 TRPM5Q9NZQ8 1165 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 KLHL8Q9P2G9 620 aaPredicted RBP5.71□□□□□ -1.5
VPS13C-209ENST00000560637 SAE1Q9UBE0 346 aaPredicted RBP5.71□□□□□ -1.5
VPS13C-209ENST00000560637 C2CD2Q9Y426 696 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 JRKLQ9Y4A0 524 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 IGKV6D-21A0A0A0MT36 114 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 HEXIM1O94992 359 aaKnown RBP5.71□□□□□ -1.5
VPS13C-209ENST00000560637 VNN1O95497 513 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 CA3P07451 260 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 IGFBP6P24592 240 aaPredicted RBP5.71□□□□□ -1.5
VPS13C-209ENST00000560637 SLC11A1P49279 550 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 GPR15P49685 360 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 MTMR3Q13615 1198 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 BBS9Q3SYG4 887 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 PPM1LQ5SGD2 360 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 COL13A1Q5TAT6 717 aaPredicted RBP5.71□□□□□ -1.5
VPS13C-209ENST00000560637 RNF219Q5W0B1 726 aaPredicted RBP5.71□□□□□ -1.5
VPS13C-209ENST00000560637 ACAD10Q6JQN1 1059 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 CRELD2Q6UXH1 353 aaPredicted RBP5.71□□□□□ -1.5
VPS13C-209ENST00000560637 DDX53Q86TM3 631 aaKnown RBP5.71□□□□□ -1.5
VPS13C-209ENST00000560637 SLC9A9Q8IVB4 645 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 PGBD3Q8N328 593 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 MAB21L3Q8N8X9 362 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 FEZF2Q8TBJ5 459 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 COG1Q8WTW3 980 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 FIZ1Q96SL8 496 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 CIPCQ9C0C6 399 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 ADAMTS10Q9H324 1103 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 WDCPQ9H6R7 721 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 ARFGAP3Q9NP61 516 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 ABCF3Q9NUQ8 709 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 AMACRQ9UHK6 382 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 MOSPD1Q9UJG1 213 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 TTC28Q96AY4 2481 aa5.71□□□□□ -1.5
VPS13C-209ENST00000560637 ZDBF2Q9HCK1 2354 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 RCCD1A6NED2 376 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 NEMP1O14524 444 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 NBNO60934 754 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 RPLP2P05387 115 aaKnown RBP5.7□□□□□ -1.5
VPS13C-209ENST00000560637 GPD1P21695 349 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 HPDP32754 393 aaPredicted RBP5.7□□□□□ -1.5
VPS13C-209ENST00000560637 RFC1P35251 1148 aaPredicted RBP5.7□□□□□ -1.5
VPS13C-209ENST00000560637 EPHB3P54753 998 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 GCNT1Q02742 428 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 BST2Q10589 180 aaKnown RBP5.7□□□□□ -1.5
VPS13C-209ENST00000560637 ELAVL2Q12926 359 aaKnown RBP5.7□□□□□ -1.5
VPS13C-209ENST00000560637 TSTA3Q13630 321 aaPredicted RBP5.7□□□□□ -1.5
VPS13C-209ENST00000560637 MYBPC2Q14324 1141 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 PKN2Q16513 984 aaKnown RBP5.7□□□□□ -1.5
VPS13C-209ENST00000560637 PCSK7Q16549 785 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 POM121L1PQ3SYA9 428 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 DCLRE1AQ6PJP8 1040 aa5.7□□□□□ -1.5
VPS13C-209ENST00000560637 DENND5BQ6ZUT9 1274 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 37.5 ms