RNA–Protein interactions for RNA: ENST00000560634.1

CSPG4P11-201, Transcript of chondroitin sulfate proteoglycan 4 pseudogene 11, humanhuman

BASIC

Gene CSPG4P11, Length 4,910 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG4P11-201ENST00000560634 FAM228BP0C875 321 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 FDPSP14324 419 aaKnown RBP13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 ALOX15P16050 662 aaPredicted RBP13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 RASA1P20936 1047 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 PAPD7Q5XG87 772 aaKnown RBP13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 CD302Q8IX05 232 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 ATP6V0D2Q8N8Y2 350 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 TBC1D16Q8TBP0 767 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 ACTRT1Q8TDG2 376 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 THAP2Q9H0W7 228 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 TMBIM4Q9HC24 238 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 C6orf203Q9P0P8 240 aaPredicted RBP13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 TMCC3Q9ULS5 477 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 SH3BP1Q9Y3L3 701 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 C2orf81A6NN90 581 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 DYNC1LI2O43237 492 aaPredicted RBP13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 RPS6KA5O75582 802 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 NCAM1P13591 858 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 ZNF23P17027 643 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 ANTXR2P58335 489 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 TRIM71Q2Q1W2 868 aaKnown RBP13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 SYTL2Q9HCH5 934 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 UBQLN1Q9UMX0 589 aaKnown RBP13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 RAD54BQ9Y620 910 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 NBPF26B4DH59 902 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 VPS26AO75436 327 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 RBP1P09455 135 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 RRM2P31350 389 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 ILF2Q12905 390 aaKnown RBP13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 CLEC16AQ2KHT3 1053 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 NBPF15Q8N660 670 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 TARS2Q9BW92 718 aaKnown RBP13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 ZNRF3Q9ULT6 936 aa13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 ZCCHC11Q5TAX3 1644 aaKnown RBP13.68□□□□□ -0.22
CSPG4P11-201ENST00000560634 NFIXQ14938 502 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 SEL1L3Q68CR1 1132 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 CHST13Q8NET6 341 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 SGF29Q96ES7 293 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 DRG1Q9Y295 367 aaKnown RBP13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 IQCA1LA6NCM1 817 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 RGS5O15539 181 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 IFNA14P01570 189 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 SCTRP47872 440 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 TBL3Q12788 808 aaKnown RBP13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 MMRN1Q13201 1228 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 TRMT5Q32P41 509 aaKnown RBP13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 NOTUMQ6P988 496 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 SLC26A11Q86WA9 606 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 UBA3Q8TBC4 463 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 FAM151AQ8WW52 585 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 SRPK1Q96SB4 655 aaKnown RBP13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 JMJD4Q9H9V9 463 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 CACNA2D2Q9NY47 1150 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 TBX20Q9UMR3 447 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 ZNF839A8K0R7 811 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 PURAQ00577 322 aaKnown RBP13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 OVGP1Q12889 678 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 TFDP3Q5H9I0 405 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 PLA2G4FQ68DD2 849 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 HS6ST3Q8IZP7 471 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 C1orf131Q8NDD1 294 aaKnown RBP13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 GPRASP2Q96D09 838 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 KRCC1Q9NPI7 259 aaPredicted RBP13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 TAGLN3Q9UI15 199 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 HPS5Q9UPZ3 1129 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 A0A0A6YYK5 440 aaPredicted RBP13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 DLGAP3O95886 979 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 CSF1RP07333 972 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 MOXD1Q6UVY6 613 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 ZNF467Q7Z7K2 595 aaPredicted RBP13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 PRRG3Q9BZD7 231 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 HAO1Q9UJM8 370 aa13.67□□□□□ -0.22
CSPG4P11-201ENST00000560634 PREX2Q70Z35 1606 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 REREQ9P2R6 1566 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 PRRG1O14668 218 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 TM9SF1O15321 606 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 CYP2C9P11712 490 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 H2AFXP16104 143 aaPredicted RBP13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 GARTP22102 1010 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 SOX11P35716 441 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 ANGPT1Q15389 498 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 ARHGAP17Q68EM7 881 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 BRINP3Q76B58 766 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 CHMP1BQ7LBR1 199 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 FBXO36Q8NEA4 188 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 C19orf60Q96EN9 201 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 OGTO15294 1046 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 PMPCBO75439 489 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 VDRP11473 427 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 PTPN4P29074 926 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 KLK7P49862 253 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 ARMCX4Q5H9R4 360 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 TIGD7Q6NT04 549 aaPredicted RBP13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 NCKIPSDQ9NZQ3 722 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 SNX13Q9Y5W8 968 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 CNOT3O75175 753 aaKnown RBP13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 MZF1P28698 734 aaPredicted RBP13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 KRT20P35900 424 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 NCF4Q15080 339 aa13.66□□□□□ -0.22
CSPG4P11-201ENST00000560634 EFCAB12Q6NXP0 572 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms