RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 PRSS36Q5K4E3 855 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 C1orf220Q5T0J3 134 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 TDRD10Q5VZ19 366 aaKnown RBP12.55□□□□□ -0.4
LDLR-212ENST00000560467 SLC8B1Q6J4K2 584 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 LRRC8AQ8IWT6 810 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 OR5B17Q8NGF7 314 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 PLEKHO2Q8TD55 490 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 ZNF516Q92618 1163 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 ELSPBP1Q96BH3 223 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 ZNF560Q96MR9 790 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 UROC1Q96N76 676 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 NELL2Q99435 816 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 PARD6AQ9NPB6 346 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 AVENQ9NQS1 362 aaPredicted RBP12.55□□□□□ -0.4
LDLR-212ENST00000560467 USP18Q9UMW8 372 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 AGAP1Q9UPQ3 857 aa12.55□□□□□ -0.4
LDLR-212ENST00000560467 MRPS17Q9Y2R5 130 aaKnown RBP12.55□□□□□ -0.4
LDLR-212ENST00000560467 FANCMQ8IYD8 2048 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 PODXLO00592 558 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 NCAM2O15394 837 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 CCP110O43303 1012 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 TRAPPC3O43617 180 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 ITGB3P05106 788 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 SKILP12757 684 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 TDGF1P13385 188 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 FERP16591 822 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 PTPN2P17706 415 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 RPL9P32969 192 aaKnown RBP12.54□□□□□ -0.4
LDLR-212ENST00000560467 KLK7P49862 253 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 GCNT1Q02742 428 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 LMNB2Q03252 620 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 ADCY1Q08828 1119 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 ARHGAP44Q17R89 818 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 ALKAL1Q6UXT8 129 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 RTL10Q7L3V2 364 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 TXLNBQ8N3L3 684 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 DNASE1L2Q92874 299 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 SECISBP2LQ93073 1101 aaKnown RBP12.54□□□□□ -0.4
LDLR-212ENST00000560467 HPDLQ96IR7 371 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 CCDC42Q96M95 316 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 ZSWIM3Q96MP5 696 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 ZMAT2Q96NC0 199 aaKnown RBP12.54□□□□□ -0.4
LDLR-212ENST00000560467 CHRDQ9H2X0 955 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 BRD9Q9H8M2 597 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 CYP4F11Q9HBI6 524 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 LUC7LQ9NQ29 371 aaKnown RBP12.54□□□□□ -0.4
LDLR-212ENST00000560467 ABHD10Q9NUJ1 306 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 CDV3Q9UKY7 258 aaKnown RBP12.54□□□□□ -0.4
LDLR-212ENST00000560467 INSL5Q9Y5Q6 135 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 VWA8A3KMH1 1905 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 MTCL1Q9Y4B5 1905 aaKnown RBP12.54□□□□□ -0.4
LDLR-212ENST00000560467 NOTCH4Q99466 2003 aa12.54□□□□□ -0.4
LDLR-212ENST00000560467 DCDC2BA2VCK2 349 aa12.53□□□□□ -0.4
LDLR-212ENST00000560467 TBC1D4O60343 1298 aa12.53□□□□□ -0.4
LDLR-212ENST00000560467 KRT37O76014 449 aa12.53□□□□□ -0.4
LDLR-212ENST00000560467 ABLIM3O94929 683 aa12.53□□□□□ -0.4
LDLR-212ENST00000560467 ELF1P32519 619 aa12.53□□□□□ -0.4
LDLR-212ENST00000560467 NOP14P78316 857 aaKnown RBP12.53□□□□□ -0.4
LDLR-212ENST00000560467 ARID5AQ03989 594 aa12.53□□□□□ -0.4
LDLR-212ENST00000560467 WDR72Q3MJ13 1102 aa12.53□□□□□ -0.4
LDLR-212ENST00000560467 SV2CQ496J9 727 aa12.53□□□□□ -0.4
LDLR-212ENST00000560467 XKR4Q5GH76 650 aa12.53□□□□□ -0.4
LDLR-212ENST00000560467 EFCAB13Q8IY85 973 aa12.53□□□□□ -0.4
LDLR-212ENST00000560467 TCEAL8Q8IYN2 117 aa12.53□□□□□ -0.4
LDLR-212ENST00000560467 HS6ST3Q8IZP7 471 aa12.53□□□□□ -0.4
LDLR-212ENST00000560467 TMEM130Q8N3G9 435 aa12.53□□□□□ -0.4
LDLR-212ENST00000560467 GPR161Q8N6U8 529 aaKnown RBP12.53□□□□□ -0.4
LDLR-212ENST00000560467 LRRC52Q8N7C0 313 aa12.53□□□□□ -0.4
LDLR-212ENST00000560467 ZNF461Q8TAF7 563 aa12.53□□□□□ -0.4
LDLR-212ENST00000560467 C18orf25Q96B23 403 aaPredicted RBP12.53□□□□□ -0.4
LDLR-212ENST00000560467 ASB16Q96NS5 453 aa12.53□□□□□ -0.4
LDLR-212ENST00000560467 DNAJC7Q99615 494 aa12.53□□□□□ -0.4
LDLR-212ENST00000560467 NIF3L1Q9GZT8 377 aa12.53□□□□□ -0.4
LDLR-212ENST00000560467 FAM124BQ9H5Z6 455 aaPredicted RBP12.53□□□□□ -0.4
LDLR-212ENST00000560467 ZFP14Q9HCL3 533 aa12.53□□□□□ -0.4
LDLR-212ENST00000560467 NXF1Q9UBU9 619 aaKnown RBP12.53□□□□□ -0.4
LDLR-212ENST00000560467 GMEB2Q9UKD1 530 aa12.53□□□□□ -0.4
LDLR-212ENST00000560467 NCANO14594 1321 aa12.53□□□□□ -0.4
LDLR-212ENST00000560467 CHD8Q9HCK8 2581 aa12.52□□□□□ -0.4
LDLR-212ENST00000560467 LRRC53A6NM62 1247 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 MEFVO15553 781 aaPredicted RBP12.52□□□□□ -0.41
LDLR-212ENST00000560467 MOSPD3O75425 235 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 ASS1P00966 412 aaKnown RBP12.52□□□□□ -0.41
LDLR-212ENST00000560467 SERPING1P05155 500 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 KRT5P13647 590 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 GJA1P17302 382 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 MSNP26038 577 aaKnown RBP12.52□□□□□ -0.41
LDLR-212ENST00000560467 POLR2BP30876 1174 aaKnown RBP12.52□□□□□ -0.41
LDLR-212ENST00000560467 GDI1P31150 447 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 CYLC1P35663 651 aaPredicted RBP12.52□□□□□ -0.41
LDLR-212ENST00000560467 SOX5P35711 763 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 VIPR2P41587 438 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 MYL6P60660 151 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 KLHL30Q0D2K2 578 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 CUL2Q13617 745 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 DRAP1Q14919 205 aaPredicted RBP12.52□□□□□ -0.41
LDLR-212ENST00000560467 SPA17Q15506 151 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 IQCEQ6IPM2 695 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 VITQ6UXI7 678 aa12.52□□□□□ -0.41
LDLR-212ENST00000560467 PDZD4Q76G19 769 aaPredicted RBP12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 41.2 ms