RNA–Protein interactions for RNA: ENST00000558518.5

LDLR-208, Transcript of low density lipoprotein receptor, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LDLR, Length 3,617 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-208ENST00000558518 OGDHQ02218 1023 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 LBRQ14739 615 aaKnown RBP11.84□□□□□ -0.51
LDLR-208ENST00000558518 MORF4L2Q15014 288 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 KLHL38Q2WGJ6 581 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 TFDP3Q5H9I0 405 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 RNASEH2BQ5TBB1 312 aaKnown RBP11.84□□□□□ -0.51
LDLR-208ENST00000558518 VWA5B1Q5TIE3 1220 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 TDRD10Q5VZ19 366 aaKnown RBP11.84□□□□□ -0.51
LDLR-208ENST00000558518 SLC9A9Q8IVB4 645 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 OR5B17Q8NGF7 314 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 SAR1AQ9NR31 198 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 SLC7A8Q9UHI5 535 aa11.84□□□□□ -0.51
LDLR-208ENST00000558518 SHANK3Q9BYB0 1731 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 ALOX15BO15296 676 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 DNAJC6O75061 913 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 MTA2O94776 668 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 RAP1GAPP47736 663 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 HIC1Q14526 733 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 AOC3Q16853 763 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 PPIL6Q8IXY8 311 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 CHURC1Q8WUH1 139 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 ZNF606Q8WXB4 792 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 TRIM11Q96F44 468 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 FAM81BQ96LP2 452 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 ECSITQ9BQ95 431 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 MSTO1Q9BUK6 570 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 STX18Q9P2W9 335 aaKnown RBP11.83□□□□□ -0.52
LDLR-208ENST00000558518 NUB1Q9Y5A7 615 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 TCRBV9S1A1TA0A576 114 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 CCDC78A2IDD5 438 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 NEMP1O14524 444 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 MCF2LO15068 1137 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 P4HA2O15460 535 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 PSTPIP1O43586 416 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 PEX1O43933 1283 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 PEX2P28328 305 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 ABCG1P45844 678 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 NOMO3P69849 1222 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 CDC16Q13042 620 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 CYTH1Q15438 398 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 CTC1Q2NKJ3 1217 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 ARHGEF16Q5VV41 709 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 ZBTB46Q86UZ6 589 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 TMEM161BQ8NDZ6 487 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 PRPF31Q8WWY3 499 aaKnown RBP11.83□□□□□ -0.52
LDLR-208ENST00000558518 PGBD4Q96DM1 585 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 CNBD2Q96M20 576 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 TMEM165Q9HC07 324 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 AGO2Q9UKV8 859 aaKnown RBP11.83□□□□□ -0.52
LDLR-208ENST00000558518 SCINQ9Y6U3 715 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 SCN7AQ01118 1682 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 PTPRJQ12913 1337 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 RFC1P35251 1148 aaPredicted RBP11.83□□□□□ -0.52
LDLR-208ENST00000558518 NOVP48745 357 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 GPC3P51654 580 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 CCNG1P51959 295 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 BPIFB4P59827 614 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 CUL2Q13617 745 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 TKFCQ3LXA3 575 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 ZNF568Q3ZCX4 644 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 MON1BQ7L1V2 547 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 KATNAL2Q8IYT4 538 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 ABRAQ8N0Z2 381 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 IWS1Q96ST2 819 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 RMDN3Q96TC7 470 aa11.83□□□□□ -0.52
LDLR-208ENST00000558518 APOBEC3GQ9HC16 384 aaKnown RBP11.83□□□□□ -0.52
LDLR-208ENST00000558518 DOT1LQ8TEK3 1739 aa11.82□□□□□ -0.52
LDLR-208ENST00000558518 CYP1A1P04798 512 aaPredicted RBP11.82□□□□□ -0.52
LDLR-208ENST00000558518 MUTP22033 750 aa11.82□□□□□ -0.52
LDLR-208ENST00000558518 AQP4P55087 323 aa11.82□□□□□ -0.52
LDLR-208ENST00000558518 TRPC3Q13507 836 aa11.82□□□□□ -0.52
LDLR-208ENST00000558518 PAOXQ6QHF9 649 aa11.82□□□□□ -0.52
LDLR-208ENST00000558518 THNSL1Q8IYQ7 743 aa11.82□□□□□ -0.52
LDLR-208ENST00000558518 CEP120Q8N960 986 aa11.82□□□□□ -0.52
LDLR-208ENST00000558518 FAM136AQ96C01 138 aa11.82□□□□□ -0.52
LDLR-208ENST00000558518 POLR3FQ9H1D9 316 aaPredicted RBP11.82□□□□□ -0.52
LDLR-208ENST00000558518 PREBQ9HCU5 417 aa11.82□□□□□ -0.52
LDLR-208ENST00000558518 SLC24A2Q9UI40 661 aa11.82□□□□□ -0.52
LDLR-208ENST00000558518 CNTNAP4Q9C0A0 1308 aa11.82□□□□□ -0.52
LDLR-208ENST00000558518 GOLGA8QA0A0J9YX86 632 aa11.82□□□□□ -0.52
LDLR-208ENST00000558518 GOLGA8OA6NCC3 632 aa11.82□□□□□ -0.52
LDLR-208ENST00000558518 CXorf49A8MYA2 514 aaPredicted RBP11.82□□□□□ -0.52
LDLR-208ENST00000558518 GOLGA8NF8WBI6 632 aa11.82□□□□□ -0.52
LDLR-208ENST00000558518 KCNN4O15554 427 aa11.82□□□□□ -0.52
LDLR-208ENST00000558518 PSMC1P62191 440 aaKnown RBP11.82□□□□□ -0.52
LDLR-208ENST00000558518 SLC39A4Q6P5W5 647 aa11.82□□□□□ -0.52
LDLR-208ENST00000558518 JOSD2Q8TAC2 188 aa11.82□□□□□ -0.52
LDLR-208ENST00000558518 DEPTORQ8TB45 409 aa11.82□□□□□ -0.52
LDLR-208ENST00000558518 RAB3IL1Q8TBN0 382 aa11.82□□□□□ -0.52
LDLR-208ENST00000558518 VTI1AQ96AJ9 217 aa11.82□□□□□ -0.52
LDLR-208ENST00000558518 MOCOSQ96EN8 888 aa11.82□□□□□ -0.52
LDLR-208ENST00000558518 ZNF341Q9BYN7 854 aa11.82□□□□□ -0.52
LDLR-208ENST00000558518 PDP2Q9P2J9 529 aa11.82□□□□□ -0.52
LDLR-208ENST00000558518 ZC3H7BQ9UGR2 993 aaKnown RBP11.82□□□□□ -0.52
LDLR-208ENST00000558518 FIS1Q9Y3D6 152 aa11.82□□□□□ -0.52
LDLR-208ENST00000558518 UBE4BO95155 1302 aa11.82□□□□□ -0.52
LDLR-208ENST00000558518 ADCY3O60266 1144 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 TCEA3O75764 348 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 CDH6P55285 790 aa11.81□□□□□ -0.52
LDLR-208ENST00000558518 DLG1Q12959 904 aa11.81□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms