RNA–Protein interactions for RNA: ENST00000558469.5

CUX1-216, Transcript of cut like homeobox 1, humanhuman

TSL 4

Gene CUX1, Length 588 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-216ENST00000558469 SEC24AO95486 1093 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 LSM8O95777 96 aaKnown RBP10.16□□□□□ -0.78
CUX1-216ENST00000558469 GLUD1P00367 558 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 FAM228BP0C875 321 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 HAPLN1P10915 354 aaPredicted RBP10.16□□□□□ -0.78
CUX1-216ENST00000558469 NPR3P17342 541 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 GPD2P43304 727 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 NRIP1P48552 1158 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 CLCN4P51793 760 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 KIF11P52732 1056 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 GFPT1Q06210 699 aaPredicted RBP10.16□□□□□ -0.78
CUX1-216ENST00000558469 MTF1Q14872 753 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 CLEC16AQ2KHT3 1053 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 ASTE1Q2TB18 679 aaPredicted RBP10.16□□□□□ -0.78
CUX1-216ENST00000558469 MGAT5BQ3V5L5 792 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 PKDCCQ504Y2 493 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 NAA35Q5VZE5 725 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 LILRA6Q6PI73 481 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 TRIM72Q6ZMU5 477 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 CLEC20AQ6ZU45 233 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 WDTC1Q8N5D0 677 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 TMEM35BQ8NCS4 154 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 KREMEN2Q8NCW0 462 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 C1orf131Q8NDD1 294 aaKnown RBP10.16□□□□□ -0.78
CUX1-216ENST00000558469 CCDC112Q8NEF3 446 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 SLC30A5Q8TAD4 765 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 OLIG1Q8TAK6 271 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 CRISPLD1Q9H336 500 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 SPTLC3Q9NUV7 552 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 CYTH4Q9UIA0 394 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 MAFFQ9ULX9 164 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 BOLA1Q9Y3E2 137 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 OBSL1O75147 1896 aa10.16□□□□□ -0.78
CUX1-216ENST00000558469 C2orf16Q68DN1 1984 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 PRRC2BQ5JSZ5 2229 aaKnown RBP10.15□□□□□ -0.78
CUX1-216ENST00000558469 F8VP50 259 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 XPO1O14980 1071 aaKnown RBP10.15□□□□□ -0.78
CUX1-216ENST00000558469 TRIM66O15016 1216 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 NRDCO43847 1150 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 CYP1A1P04798 512 aaPredicted RBP10.15□□□□□ -0.78
CUX1-216ENST00000558469 SETSIPP0DME0 302 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 UNGP13051 313 aaPredicted RBP10.15□□□□□ -0.78
CUX1-216ENST00000558469 EPCAMP16422 314 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 ANXA13P27216 316 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 CDH5P33151 784 aaPredicted RBP10.15□□□□□ -0.78
CUX1-216ENST00000558469 CYLC1P35663 651 aaPredicted RBP10.15□□□□□ -0.78
CUX1-216ENST00000558469 MAGEA11P43364 429 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 NSFP46459 744 aaKnown RBP10.15□□□□□ -0.78
CUX1-216ENST00000558469 TUFMP49411 452 aaKnown RBP10.15□□□□□ -0.78
CUX1-216ENST00000558469 GPR15P49685 360 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 RGS7P49802 495 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 NOMO3P69849 1222 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 CCZ1BP86790 482 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 CCZ1P86791 482 aaPredicted RBP10.15□□□□□ -0.78
CUX1-216ENST00000558469 SLC18A3Q16572 532 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 DDR2Q16832 855 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 CCDC122Q5T0U0 273 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 SDHAF4Q5VUM1 108 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 ACAD10Q6JQN1 1059 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 PMF1Q6P1K2 205 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 LLGL2Q6P1M3 1020 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 VSTM1Q6UX27 236 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 RAD9BQ6WBX8 426 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 DNAAF5Q86Y56 855 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 TCEAL8Q8IYN2 117 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 CCDC170Q8IYT3 715 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 ZMIZ2Q8NF64 920 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 GPR152Q8TDT2 470 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 SLC35F5Q8WV83 523 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 PPP2R3CQ969Q6 453 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 KCNF1Q9H3M0 494 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 NSUN3Q9H649 340 aaKnown RBP10.15□□□□□ -0.78
CUX1-216ENST00000558469 IGFLR1Q9H665 355 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 CSNK1G1Q9HCP0 422 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 DMAP1Q9NPF5 467 aaPredicted RBP10.15□□□□□ -0.78
CUX1-216ENST00000558469 ST7Q9NRC1 585 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 TAS2R14Q9NYV8 317 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 LMCD1Q9NZU5 365 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 HSFX1Q9UBD0 423 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 FBXW11Q9UKB1 542 aa10.15□□□□□ -0.78
CUX1-216ENST00000558469 EPN1Q9Y6I3 576 aaPredicted RBP10.15□□□□□ -0.78
CUX1-216ENST00000558469 ANAPC1Q9H1A4 1944 aa10.15□□□□□ -0.79
CUX1-216ENST00000558469 HHLA1C9JL84 531 aa10.14□□□□□ -0.79
CUX1-216ENST00000558469 PIK3R2O00459 728 aa10.14□□□□□ -0.79
CUX1-216ENST00000558469 ARHGAP6O43182 974 aa10.14□□□□□ -0.79
CUX1-216ENST00000558469 RTN2O75298 545 aa10.14□□□□□ -0.79
CUX1-216ENST00000558469 NDUFA10O95299 355 aa10.14□□□□□ -0.79
CUX1-216ENST00000558469 FTLP02792 175 aaPredicted RBP10.14□□□□□ -0.79
CUX1-216ENST00000558469 GZMAP12544 262 aa10.14□□□□□ -0.79
CUX1-216ENST00000558469 LCP1P13796 627 aa10.14□□□□□ -0.79
CUX1-216ENST00000558469 IGFBP4P22692 258 aa10.14□□□□□ -0.79
CUX1-216ENST00000558469 GTF2F1P35269 517 aaKnown RBP eCLIP10.14□□□□□ -0.792e-8■■■□□ 18.7
CUX1-216ENST00000558469 PLA2G4AP47712 749 aa10.14□□□□□ -0.79
CUX1-216ENST00000558469 ALDH1A3P47895 512 aa10.14□□□□□ -0.79
CUX1-216ENST00000558469 RPL10AP62906 217 aaKnown RBP10.14□□□□□ -0.79
CUX1-216ENST00000558469 CENPCQ03188 943 aa10.14□□□□□ -0.79
CUX1-216ENST00000558469 PDCLQ13371 301 aa10.14□□□□□ -0.79
CUX1-216ENST00000558469 DUSP6Q16828 381 aa10.14□□□□□ -0.79
CUX1-216ENST00000558469 HABP4Q5JVS0 413 aaKnown RBP10.14□□□□□ -0.79
CUX1-216ENST00000558469 ALKBH5Q6P6C2 394 aaKnown RBP10.14□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms