RNA–Protein interactions for RNA: ENST00000558117.1

RTF1-204, Transcript of RTF1 homolog, Paf1/RNA polymerase II complex component, humanhuman

TSL 4

Gene RTF1, Length 552 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTF1-204ENST00000558117 SCAF4O95104 1147 aaKnown RBP7.16□□□□□ -1.26
RTF1-204ENST00000558117 SNRPA1P09661 255 aaKnown RBP7.16□□□□□ -1.26
RTF1-204ENST00000558117 PTGS2P35354 604 aa7.16□□□□□ -1.26
RTF1-204ENST00000558117 ALDH1A3P47895 512 aa7.16□□□□□ -1.26
RTF1-204ENST00000558117 SP140Q13342 867 aa7.16□□□□□ -1.26
RTF1-204ENST00000558117 VGLL4Q14135 290 aa7.16□□□□□ -1.26
RTF1-204ENST00000558117 TMEM240Q5SV17 173 aa7.16□□□□□ -1.26
RTF1-204ENST00000558117 RNF169Q8NCN4 708 aa7.16□□□□□ -1.26
RTF1-204ENST00000558117 OR10H5Q8NGA6 315 aa7.16□□□□□ -1.26
RTF1-204ENST00000558117 SLC25A43Q8WUT9 341 aaPredicted RBP7.16□□□□□ -1.26
RTF1-204ENST00000558117 BADQ92934 168 aa7.16□□□□□ -1.26
RTF1-204ENST00000558117 KAT5Q92993 513 aa7.16□□□□□ -1.26
RTF1-204ENST00000558117 HDAC10Q969S8 669 aa7.16□□□□□ -1.26
RTF1-204ENST00000558117 MYOCQ99972 504 aa7.16□□□□□ -1.26
RTF1-204ENST00000558117 MANSC1Q9H8J5 431 aa7.16□□□□□ -1.26
RTF1-204ENST00000558117 LTBP2Q14767 1821 aa7.15□□□□□ -1.26
RTF1-204ENST00000558117 HSFX4A0A1B0GTS1 333 aaPredicted RBP7.15□□□□□ -1.26
RTF1-204ENST00000558117 HSFX3A0A1B0GWH4 333 aaPredicted RBP7.15□□□□□ -1.26
RTF1-204ENST00000558117 PJA2O43164 708 aa7.15□□□□□ -1.26
RTF1-204ENST00000558117 ADH4P08319 380 aa7.15□□□□□ -1.26
RTF1-204ENST00000558117 RAP2AP10114 183 aa7.15□□□□□ -1.26
RTF1-204ENST00000558117 MAKP20794 623 aa7.15□□□□□ -1.26
RTF1-204ENST00000558117 RAB27AP51159 221 aa7.15□□□□□ -1.26
RTF1-204ENST00000558117 ATP8B2P98198 1209 aa7.15□□□□□ -1.26
RTF1-204ENST00000558117 TARDBPQ13148 414 aaKnown RBP eCLIP7.15□□□□□ -1.26
RTF1-204ENST00000558117 MTHFSDQ2M296 383 aaKnown RBP7.15□□□□□ -1.26
RTF1-204ENST00000558117 RRP12Q5JTH9 1297 aaKnown RBP7.15□□□□□ -1.26
RTF1-204ENST00000558117 DACT2Q5SW24 774 aa7.15□□□□□ -1.26
RTF1-204ENST00000558117 DRICH1Q6PGQ1 229 aaPredicted RBP7.15□□□□□ -1.26
RTF1-204ENST00000558117 MIGA2Q7L4E1 593 aa7.15□□□□□ -1.26
RTF1-204ENST00000558117 PPP1R42Q7Z4L9 355 aa7.15□□□□□ -1.26
RTF1-204ENST00000558117 SYT12Q8IV01 421 aa7.15□□□□□ -1.26
RTF1-204ENST00000558117 MIER2Q8N344 545 aa7.15□□□□□ -1.26
RTF1-204ENST00000558117 SLC16A11Q8NCK7 471 aa7.15□□□□□ -1.26
RTF1-204ENST00000558117 IL17REQ8NFR9 667 aa7.15□□□□□ -1.26
RTF1-204ENST00000558117 CELF1Q92879 486 aaKnown RBP7.15□□□□□ -1.26
RTF1-204ENST00000558117 HSPBAP1Q96EW2 488 aa7.15□□□□□ -1.26
RTF1-204ENST00000558117 DCLRE1CQ96SD1 692 aaKnown RBP7.15□□□□□ -1.26
RTF1-204ENST00000558117 MRI1Q9BV20 369 aa7.15□□□□□ -1.26
RTF1-204ENST00000558117 SLC23A1Q9UHI7 598 aa7.15□□□□□ -1.26
RTF1-204ENST00000558117 RALYQ9UKM9 306 aaKnown RBP7.15□□□□□ -1.26
RTF1-204ENST00000558117 PCDHB1Q9Y5F3 818 aa7.15□□□□□ -1.26
RTF1-204ENST00000558117 ZNF804BA4D1E1 1349 aa7.15□□□□□ -1.26
RTF1-204ENST00000558117 MAP3K15Q6ZN16 1313 aa7.15□□□□□ -1.26
RTF1-204ENST00000558117 MYBBP1AQ9BQG0 1328 aaKnown RBP7.15□□□□□ -1.26
RTF1-204ENST00000558117 ASH1LQ9NR48 2969 aaKnown RBP7.14□□□□□ -1.27
RTF1-204ENST00000558117 TRIOO75962 3097 aa7.14□□□□□ -1.27
RTF1-204ENST00000558117 CYR61O00622 381 aa7.14□□□□□ -1.27
RTF1-204ENST00000558117 TEX33O43247 280 aa7.14□□□□□ -1.27
RTF1-204ENST00000558117 AKAP10O43572 662 aa7.14□□□□□ -1.27
RTF1-204ENST00000558117 PPFIA4O75335 1185 aa7.14□□□□□ -1.27
RTF1-204ENST00000558117 ABLIM3O94929 683 aa7.14□□□□□ -1.27
RTF1-204ENST00000558117 IL33O95760 270 aa7.14□□□□□ -1.27
RTF1-204ENST00000558117 SPATA31D3P0C874 917 aa7.14□□□□□ -1.27
RTF1-204ENST00000558117 ALADP13716 330 aa7.14□□□□□ -1.27
RTF1-204ENST00000558117 DDCP20711 480 aa7.14□□□□□ -1.27
RTF1-204ENST00000558117 APOBEC3AP31941 199 aaPredicted RBP7.14□□□□□ -1.27
RTF1-204ENST00000558117 MMP14P50281 582 aa7.14□□□□□ -1.27
RTF1-204ENST00000558117 CLRN1P58418 232 aa7.14□□□□□ -1.27
RTF1-204ENST00000558117 RAP2BP61225 183 aa7.14□□□□□ -1.27
RTF1-204ENST00000558117 TCF15Q12870 199 aa7.14□□□□□ -1.27
RTF1-204ENST00000558117 MTM1Q13496 603 aa7.14□□□□□ -1.27
RTF1-204ENST00000558117 ODR4Q5SWX8 454 aa7.14□□□□□ -1.27
RTF1-204ENST00000558117 ATXN7L2Q5T6C5 722 aaPredicted RBP7.14□□□□□ -1.27
RTF1-204ENST00000558117 SPATA31D4Q6ZUB0 917 aa7.14□□□□□ -1.27
RTF1-204ENST00000558117 ANKRD23Q86SG2 305 aa7.14□□□□□ -1.27
RTF1-204ENST00000558117 ZNF276Q8N554 614 aa7.14□□□□□ -1.27
RTF1-204ENST00000558117 CYFIP2Q96F07 1278 aa7.14□□□□□ -1.27
RTF1-204ENST00000558117 NRDE2Q9H7Z3 1164 aa7.14□□□□□ -1.27
RTF1-204ENST00000558117 TCF7L1Q9HCS4 588 aa7.14□□□□□ -1.27
RTF1-204ENST00000558117 SLC2A4RGQ9NR83 387 aa7.14□□□□□ -1.27
RTF1-204ENST00000558117 RUVBL1Q9Y265 456 aaKnown RBP7.14□□□□□ -1.27
RTF1-204ENST00000558117 OTOFQ9HC10 1997 aa7.13□□□□□ -1.27
RTF1-204ENST00000558117 PSME4Q14997 1843 aa7.13□□□□□ -1.27
RTF1-204ENST00000558117 CEMIPQ8WUJ3 1361 aa7.13□□□□□ -1.27
RTF1-204ENST00000558117 GRXCR1A8MXD5 290 aa7.13□□□□□ -1.27
RTF1-204ENST00000558117 DIRC3C9JPN6 131 aa7.13□□□□□ -1.27
RTF1-204ENST00000558117 LEFTY2O00292 366 aa7.13□□□□□ -1.27
RTF1-204ENST00000558117 PDHXO00330 501 aa7.13□□□□□ -1.27
RTF1-204ENST00000558117 GPR32O75388 356 aa7.13□□□□□ -1.27
RTF1-204ENST00000558117 SLC25A3Q00325 362 aa7.13□□□□□ -1.27
RTF1-204ENST00000558117 SNAPC2Q13487 334 aa7.13□□□□□ -1.27
RTF1-204ENST00000558117 PARP10Q53GL7 1025 aa7.13□□□□□ -1.27
RTF1-204ENST00000558117 DRC7Q8IY82 874 aa7.13□□□□□ -1.27
RTF1-204ENST00000558117 CASKIN2Q8WXE0 1202 aa7.13□□□□□ -1.27
RTF1-204ENST00000558117 HERVK_113Q902F9 699 aa7.13□□□□□ -1.27
RTF1-204ENST00000558117 DMRTA2Q96SC8 542 aa7.13□□□□□ -1.27
RTF1-204ENST00000558117 UTP14AQ9BVJ6 771 aaKnown RBP7.13□□□□□ -1.27
RTF1-204ENST00000558117 KRTAP4-11Q9BYQ6 195 aa7.13□□□□□ -1.27
RTF1-204ENST00000558117 RHOBTB2Q9BYZ6 727 aa7.13□□□□□ -1.27
RTF1-204ENST00000558117 MMRN2Q9H8L6 949 aa7.13□□□□□ -1.27
RTF1-204ENST00000558117 TDP1Q9NUW8 608 aa7.13□□□□□ -1.27
RTF1-204ENST00000558117 TRPM5Q9NZQ8 1165 aa7.13□□□□□ -1.27
RTF1-204ENST00000558117 LRRC37A2A6NM11 1700 aa7.13□□□□□ -1.27
RTF1-204ENST00000558117 NAV2Q8IVL1 2488 aa7.12□□□□□ -1.27
RTF1-204ENST00000558117 TNPO2O14787 897 aaKnown RBP7.12□□□□□ -1.27
RTF1-204ENST00000558117 NARSO43776 548 aaKnown RBP7.12□□□□□ -1.27
RTF1-204ENST00000558117 AKAP8O43823 692 aaKnown RBP7.12□□□□□ -1.27
RTF1-204ENST00000558117 PF4V1P10720 104 aa7.12□□□□□ -1.27
RTF1-204ENST00000558117 ZSCAN20P17040 1043 aaPredicted RBP7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms