RNA–Protein interactions for RNA: ENST00000557507.1

CCDC88C-214, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 429 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-214ENST00000557507 ARHGAP26Q9UNA1 814 aa8.78□□□□□ -1
CCDC88C-214ENST00000557507 PTPRQQ9UMZ3 2332 aa8.78□□□□□ -1
CCDC88C-214ENST00000557507 MYLKQ15746 1914 aa8.78□□□□□ -1
CCDC88C-214ENST00000557507 VWA3AA6NCI4 1184 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 TRAK2O60296 914 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 ADAM23O75077 832 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 FAM13AO94988 1023 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 KLF8O95600 359 aaPredicted RBP8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 NFATC1O95644 943 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 ITPKAP23677 461 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 POLR2BP30876 1174 aaKnown RBP8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 RPL10AP62906 217 aaKnown RBP8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 HMGN5P82970 282 aaKnown RBP8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 GTF2BQ00403 316 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 NR1H3Q13133 447 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 DHX8Q14562 1220 aaKnown RBP8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 KCNB1Q14721 858 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 PEAR1Q5VY43 1037 aaPredicted RBP8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 LYSMD4Q5XG99 296 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 ADALQ6DHV7 355 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 SLC23A3Q6PIS1 610 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 LPCAT2Q7L5N7 544 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 FILIP1Q7Z7B0 1213 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 SYT12Q8IV01 421 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 CHCHD4Q8N4Q1 142 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 IL17RCQ8NAC3 791 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 FAM184AQ8NB25 1140 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 ZSWIM2Q8NEG5 633 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 WHAMMQ8TF30 809 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 HMGB4Q8WW32 186 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 CDK5RAP3Q96JB5 506 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 SPACA7Q96KW9 195 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 NUSAP1Q9BXS6 441 aaKnown RBP8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 SLC32A1Q9H598 525 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 PARVGQ9HBI0 331 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 BLOC1S4Q9NUP1 217 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 PILRBQ9UKJ0 227 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 GTF3C4Q9UKN8 822 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 AGO2Q9UKV8 859 aaKnown RBP8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 LIMCH1Q9UPQ0 1083 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 GPSM3Q9Y4H4 160 aa8.77□□□□□ -1.01
CCDC88C-214ENST00000557507 FAM221BA6H8Z2 402 aa8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 UPK3BL1B0FP48 263 aa8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 UPK3BL2E5RIL1 263 aa8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 LEFTY2O00292 366 aa8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 ITGB3P05106 788 aa8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 CFIP05156 583 aa8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 HDCP19113 662 aa8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 ADSSP30520 456 aa8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 TIE1P35590 1138 aa8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 KIR2DL1P43626 348 aaPredicted RBP8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 SLC6A11P48066 632 aa8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 USP46P62068 366 aa8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 MRPS21P82921 87 aaKnown RBP8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 KDSRQ06136 332 aa8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 CFAP221Q4G0U5 840 aa8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 SOWAHCQ53LP3 525 aaPredicted RBP8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 EMC10Q5UCC4 262 aa8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 C19orf48Q6RUI8 117 aa8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 RAB44Q7Z6P3 723 aaPredicted RBP8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 SCN4BQ8IWT1 228 aa8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 KCTD17Q8N5Z5 321 aa8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 C1orf127Q8N9H9 656 aa8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 CCDC26Q8TAB7 109 aa8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 CXorf38Q8TB03 319 aa8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 ACBD6Q9BR61 282 aa8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 GTPBP2Q9BX10 602 aaKnown RBP8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 ZHX3Q9H4I2 956 aa8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 CAPN10Q9HC96 672 aa8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 BCCIPQ9P287 314 aaKnown RBP eCLIP8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 STYXL1Q9Y6J8 313 aa8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 MUC22E2RYF6 1773 aaPredicted RBP8.76□□□□□ -1.01
CCDC88C-214ENST00000557507 ASH1LQ9NR48 2969 aaKnown RBP8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 TCRBV21S2A2A0A5A6 115 aa8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 K7ELQ4 463 aaPredicted RBP8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 MAP3K13O43283 966 aa8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 HUS1O60921 280 aa8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 ATP2C2O75185 946 aa8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 TBCAO75347 108 aaKnown RBP8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 ALDH1A2O94788 518 aa8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 KAT7O95251 611 aa8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 OLFM2O95897 454 aa8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 CD59P13987 128 aa8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 PTMSP20962 102 aa8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 SCP2P22307 547 aa8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 PNPLA4P41247 253 aa8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 PSMC1P62191 440 aaKnown RBP8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 TFAMQ00059 246 aaKnown RBP8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 MYL7Q01449 175 aa8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 MCM6Q14566 821 aa8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 DHCR24Q15392 516 aa8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 LMBRD2Q68DH5 695 aaPredicted RBP8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 PDZD3Q86UT5 571 aa8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 SPATA2LQ8IUW3 424 aaPredicted RBP8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 ADGRF2Q8IZF7 708 aa8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 PHTF2Q8N3S3 785 aa8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 HDDC3Q8N4P3 179 aa8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 MINDY1Q8N5J2 469 aa8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 DEFB119Q8N690 84 aa8.75□□□□□ -1.01
CCDC88C-214ENST00000557507 SPATA18Q8TC71 538 aa8.75□□□□□ -1.01
Retrieved 100 of 20,778 RNA–protein pairs in 30.5 ms