RNA–Protein interactions for RNA: ENST00000557487.5

SHMT2-232, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best) BASIC

Gene SHMT2, Length 1,918 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-232ENST00000557487 EMC2Q15006 297 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 SWSAP1Q6NVH7 229 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 DHX37Q8IY37 1157 aaKnown RBP17.04■□□□□ 0.32
SHMT2-232ENST00000557487 DEPTORQ8TB45 409 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 RAB3IL1Q8TBN0 382 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 MSTO1Q9BUK6 570 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 KCNK13Q9HB14 408 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 JPH1Q9HDC5 661 aaPredicted RBP17.04■□□□□ 0.32
SHMT2-232ENST00000557487 WDR35Q9P2L0 1181 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 SLC17A7Q9P2U7 560 aa17.04■□□□□ 0.32
SHMT2-232ENST00000557487 GOLGA8SH3BPF8 625 aa17.03■□□□□ 0.32
SHMT2-232ENST00000557487 GOLGA8MH3BSY2 632 aa17.03■□□□□ 0.32
SHMT2-232ENST00000557487 K7ERI5 159 aa17.03■□□□□ 0.32
SHMT2-232ENST00000557487 INHBAP08476 426 aa17.03■□□□□ 0.32
SHMT2-232ENST00000557487 WEE2P0C1S8 567 aa17.03■□□□□ 0.32
SHMT2-232ENST00000557487 SP100P23497 879 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-232ENST00000557487 STIP1P31948 543 aaKnown RBP17.03■□□□□ 0.32
SHMT2-232ENST00000557487 SOX10P56693 466 aa17.03■□□□□ 0.32
SHMT2-232ENST00000557487 ZNF200P98182 395 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-232ENST00000557487 SLC25A11Q02978 314 aaKnown RBP17.03■□□□□ 0.32
SHMT2-232ENST00000557487 PTK7Q13308 1070 aa17.03■□□□□ 0.32
SHMT2-232ENST00000557487 ACAP1Q15027 740 aa17.03■□□□□ 0.32
SHMT2-232ENST00000557487 EFTUD2Q15029 972 aaKnown RBP eCLIP17.03■□□□□ 0.324e-8■■■■■ 44
SHMT2-232ENST00000557487 SURF1Q15526 300 aa17.03■□□□□ 0.32
SHMT2-232ENST00000557487 ACSBG2Q5FVE4 666 aa17.03■□□□□ 0.32
SHMT2-232ENST00000557487 LGSNQ5TDP6 509 aa17.03■□□□□ 0.32
SHMT2-232ENST00000557487 RFWD3Q6PCD5 774 aa17.03■□□□□ 0.32
SHMT2-232ENST00000557487 DSTYKQ6XUX3 929 aa17.03■□□□□ 0.32
SHMT2-232ENST00000557487 WDR49Q8IV35 697 aa17.03■□□□□ 0.32
SHMT2-232ENST00000557487 CCDC110Q8TBZ0 833 aa17.03■□□□□ 0.32
SHMT2-232ENST00000557487 HAUS1Q96CS2 278 aa17.03■□□□□ 0.32
SHMT2-232ENST00000557487 OXNAD1Q96HP4 312 aaPredicted RBP17.03■□□□□ 0.32
SHMT2-232ENST00000557487 C7orf26Q96N11 449 aa17.03■□□□□ 0.32
SHMT2-232ENST00000557487 PORCNQ9H237 461 aa17.03■□□□□ 0.32
SHMT2-232ENST00000557487 CNTN3Q9P232 1028 aa17.03■□□□□ 0.32
SHMT2-232ENST00000557487 XPO7Q9UIA9 1087 aaKnown RBP17.03■□□□□ 0.32
SHMT2-232ENST00000557487 SIP14410 1827 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 ADGRA2Q96PE1 1338 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 WDR91A4D1P6 747 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 MAGEA13PA6NCF6 341 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 APOC4-APOC2K7ER74 178 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 MAP3K7O43318 606 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 CST8O60676 142 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 SMIM24O75264 130 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 RAD17O75943 681 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 APOC2P02655 101 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 NR3C2P08235 984 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 PDHA1P08559 390 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 PSMA2P25787 234 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 SERPINB3P29508 390 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 WNT7BP56706 349 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 SARNPP82979 210 aaKnown RBP17.02■□□□□ 0.32
SHMT2-232ENST00000557487 OVGP1Q12889 678 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 KPNB1Q14974 876 aaKnown RBP17.02■□□□□ 0.32
SHMT2-232ENST00000557487 RBBP5Q15291 538 aaKnown RBP17.02■□□□□ 0.32
SHMT2-232ENST00000557487 BBS9Q3SYG4 887 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 MSS51Q4VC12 460 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 C6orf163Q5TEZ5 329 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 ANKRD22Q5VYY1 191 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 SH2D5Q6ZV89 423 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 TMPRSS6Q8IU80 811 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 SCG3Q8WXD2 468 aaKnown RBP17.02■□□□□ 0.32
SHMT2-232ENST00000557487 GMLQ99445 158 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 NIF3L1Q9GZT8 377 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 LHX5Q9H2C1 402 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 HOMER2Q9NSB8 354 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 MKS1Q9NXB0 559 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 TAS2R1Q9NYW7 299 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 SLC9A2Q9UBY0 812 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 ZNF180Q9UJW8 692 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 GJA3Q9Y6H8 435 aa17.02■□□□□ 0.32
SHMT2-232ENST00000557487 I3L4J1 428 aa17.02■□□□□ 0.31
SHMT2-232ENST00000557487 CAPN9O14815 690 aa17.02■□□□□ 0.31
SHMT2-232ENST00000557487 MCF2LO15068 1137 aa17.02■□□□□ 0.31
SHMT2-232ENST00000557487 KDELR1P24390 212 aa17.02■□□□□ 0.31
SHMT2-232ENST00000557487 PAPOLAP51003 745 aaKnown RBP17.02■□□□□ 0.31
SHMT2-232ENST00000557487 ROR2Q01974 943 aaKnown RBP17.02■□□□□ 0.31
SHMT2-232ENST00000557487 ATG16L1Q676U5 607 aa17.02■□□□□ 0.31
SHMT2-232ENST00000557487 TXNRD3NBQ6F5E7 133 aa17.02■□□□□ 0.31
SHMT2-232ENST00000557487 ABHD15Q6UXT9 468 aa17.02■□□□□ 0.31
SHMT2-232ENST00000557487 LRRC6Q86X45 466 aa17.02■□□□□ 0.31
SHMT2-232ENST00000557487 BRSK2Q8IWQ3 736 aa17.02■□□□□ 0.31
SHMT2-232ENST00000557487 TEKT4Q8WW24 435 aa17.02■□□□□ 0.31
SHMT2-232ENST00000557487 PTPRN2Q92932 1015 aa17.02■□□□□ 0.31
SHMT2-232ENST00000557487 NR1H4Q96RI1 486 aaPredicted RBP17.02■□□□□ 0.31
SHMT2-232ENST00000557487 SYT15Q9BQS2 421 aa17.02■□□□□ 0.31
SHMT2-232ENST00000557487 WDR83Q9BRX9 315 aaKnown RBP17.02■□□□□ 0.31
SHMT2-232ENST00000557487 FAM192AQ9GZU8 254 aa17.02■□□□□ 0.31
SHMT2-232ENST00000557487 PDP2Q9P2J9 529 aa17.02■□□□□ 0.31
SHMT2-232ENST00000557487 SERPINB4P48594 390 aa17.01■□□□□ 0.31
SHMT2-232ENST00000557487 TRMT5Q32P41 509 aaKnown RBP17.01■□□□□ 0.31
SHMT2-232ENST00000557487 DNAL1Q4LDG9 190 aa17.01■□□□□ 0.31
SHMT2-232ENST00000557487 TTC39BQ5VTQ0 682 aaPredicted RBP17.01■□□□□ 0.31
SHMT2-232ENST00000557487 AP1ARQ63HQ0 302 aa17.01■□□□□ 0.31
SHMT2-232ENST00000557487 GPAT2Q6NUI2 795 aa17.01■□□□□ 0.31
SHMT2-232ENST00000557487 ZPBP2Q6X784 338 aa17.01■□□□□ 0.31
SHMT2-232ENST00000557487 NET1Q7Z628 596 aaPredicted RBP17.01■□□□□ 0.31
SHMT2-232ENST00000557487 SCYL3Q8IZE3 742 aa17.01■□□□□ 0.31
SHMT2-232ENST00000557487 SMC1BQ8NDV3 1235 aa17.01■□□□□ 0.31
SHMT2-232ENST00000557487 SPDYE1Q8NFV5 336 aaPredicted RBP17.01■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms