RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 ZNF720Q7Z2F6 126 aa13.42□□□□□ -0.26
SHMT2-230ENST00000557427 SFR1Q86XK3 245 aa13.42□□□□□ -0.26
SHMT2-230ENST00000557427 TMEM130Q8N3G9 435 aa13.42□□□□□ -0.26
SHMT2-230ENST00000557427 FAM212AQ96EL1 285 aa13.42□□□□□ -0.26
SHMT2-230ENST00000557427 UROC1Q96N76 676 aa13.42□□□□□ -0.26
SHMT2-230ENST00000557427 NAP1L5Q96NT1 182 aaPredicted RBP13.42□□□□□ -0.26
SHMT2-230ENST00000557427 TRIM9Q9C026 710 aa13.42□□□□□ -0.26
SHMT2-230ENST00000557427 HPS4Q9NQG7 708 aa13.42□□□□□ -0.26
SHMT2-230ENST00000557427 KCND1Q9NSA2 647 aa13.42□□□□□ -0.26
SHMT2-230ENST00000557427 SAMSN1Q9NSI8 373 aaKnown RBP13.42□□□□□ -0.26
SHMT2-230ENST00000557427 SLC38A7Q9NVC3 462 aa13.42□□□□□ -0.26
SHMT2-230ENST00000557427 OBP2AQ9NY56 170 aa13.42□□□□□ -0.26
SHMT2-230ENST00000557427 CTNND2Q9UQB3 1225 aa13.42□□□□□ -0.26
SHMT2-230ENST00000557427 YIPF1Q9Y548 306 aa13.42□□□□□ -0.26
SHMT2-230ENST00000557427 APC2O95996 2303 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 PLXNB3Q9ULL4 1909 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 A0A1B0GTH6 734 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 LACTBL1A8MY62 500 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 NRDCO43847 1150 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 APBB3O95704 486 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 CLTAP09496 248 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 CXCL8P10145 99 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 KCNE1P15382 129 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 MAPK8P45983 427 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 STIM1Q13586 685 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 ARID5BQ14865 1188 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 NR1I3Q14994 352 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 KLHL10Q6JEL2 608 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 SYT13Q7L8C5 426 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 CYP2U1Q7Z449 544 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 SMYD4Q8IYR2 804 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-230ENST00000557427 RPLP0P6Q8NHW5 317 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 BPIFB1Q8TDL5 484 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 PIGKQ92643 395 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 DNAJC19Q96DA6 116 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 FIZ1Q96SL8 496 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 FAM83CQ9BQN1 747 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 MSTO1Q9BUK6 570 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 TPSD1Q9BZJ3 242 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 SMG9Q9H0W8 520 aaKnown RBP13.41□□□□□ -0.26
SHMT2-230ENST00000557427 IKZF4Q9H2S9 585 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 MRPL44Q9H9J2 332 aaKnown RBP13.41□□□□□ -0.26
SHMT2-230ENST00000557427 GKN1Q9NS71 199 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 TMEM74BQ9NUR3 256 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 INTS13Q9NVM9 706 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 EVLQ9UI08 416 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-230ENST00000557427 RAXQ9Y2V3 346 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 NUP210Q8TEM1 1887 aaPredicted RBP13.41□□□□□ -0.26
SHMT2-230ENST00000557427 TENM4Q6N022 2769 aa13.41□□□□□ -0.26
SHMT2-230ENST00000557427 ACACAQ13085 2346 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 PVALEFA0A1B0GWK0 134 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 UPK3BL1B0FP48 263 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 TISP43B9A030 160 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 UPK3BL2E5RIL1 263 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 H0Y626 953 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 H7C4K7 107 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 PODXLO00592 558 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 DPYSL4O14531 572 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 SYN3O14994 580 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 C1QL1O75973 258 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 TRIM16O95361 564 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 SKILP12757 684 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 ENGP17813 658 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 PRCPP42785 496 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 GALK1P51570 392 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 DGKEP52429 567 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 STX17P56962 302 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 TBX2Q13207 712 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-230ENST00000557427 DMC1Q14565 340 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 TRIM61Q5EBN2 209 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 GPR158Q5T848 1215 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 TRIM68Q6AZZ1 485 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 ARMCX5Q6P1M9 558 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 SLC39A4Q6P5W5 647 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 APTXQ7Z2E3 356 aaKnown RBP13.4□□□□□ -0.26
SHMT2-230ENST00000557427 C17orf53Q8N3J3 647 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-230ENST00000557427 CCDC112Q8NEF3 446 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 BEST2Q8NFU1 509 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 MDM1Q8TC05 714 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 NELFBQ8WX92 580 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 CRELD1Q96HD1 420 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 DHTKD1Q96HY7 919 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-230ENST00000557427 RPF1Q9H9Y2 349 aaKnown RBP13.4□□□□□ -0.26
SHMT2-230ENST00000557427 FSCN3Q9NQT6 498 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 PANK4Q9NVE7 773 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 CNTN3Q9P232 1028 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 LIMA1Q9UHB6 759 aaKnown RBP13.4□□□□□ -0.26
SHMT2-230ENST00000557427 MBD1Q9UIS9 605 aaPredicted RBP13.4□□□□□ -0.26
SHMT2-230ENST00000557427 NUB1Q9Y5A7 615 aa13.4□□□□□ -0.26
SHMT2-230ENST00000557427 A0A0B4J269 797 aa13.39□□□□□ -0.27
SHMT2-230ENST00000557427 ANTXRLA6NF34 631 aa13.39□□□□□ -0.27
SHMT2-230ENST00000557427 EIF4E1BA6NMX2 242 aaKnown RBP13.39□□□□□ -0.27
SHMT2-230ENST00000557427 PSMA7O14818 248 aa13.39□□□□□ -0.27
SHMT2-230ENST00000557427 OGTO15294 1046 aa13.39□□□□□ -0.27
SHMT2-230ENST00000557427 GAP43P17677 238 aa13.39□□□□□ -0.27
SHMT2-230ENST00000557427 SCP2P22307 547 aa13.39□□□□□ -0.27
SHMT2-230ENST00000557427 RPL9P32969 192 aaKnown RBP13.39□□□□□ -0.27
SHMT2-230ENST00000557427 ACOT2P49753 483 aa13.39□□□□□ -0.27
SHMT2-230ENST00000557427 ASIC1P78348 528 aa13.39□□□□□ -0.27
SHMT2-230ENST00000557427 KCNA1Q09470 495 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 40.4 ms