RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 ARID5BQ14865 1188 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 HGSNATQ68CP4 663 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 WDR59Q6PJI9 974 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 PIGZQ86VD9 579 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 HS6ST3Q8IZP7 471 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 TC2NQ8N9U0 490 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 SPC24Q8NBT2 197 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 ZNF397Q8NF99 534 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-227ENST00000557269 MAFAQ8NHW3 353 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-227ENST00000557269 SLC35F5Q8WV83 523 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 SYN2Q92777 582 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-227ENST00000557269 DNAJC7Q99615 494 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 PRKD2Q9BZL6 878 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 HAUS4Q9H6D7 363 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 SFXN1Q9H9B4 322 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 ZNF334Q9HCZ1 680 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-227ENST00000557269 DMAP1Q9NPF5 467 aaPredicted RBP13.56□□□□□ -0.24
SHMT2-227ENST00000557269 DZANK1Q9NVP4 752 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 ZDHHC7Q9NXF8 308 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 PCDHGC3Q9UN70 934 aa13.56□□□□□ -0.24
SHMT2-227ENST00000557269 SPDYE4A6NLX3 237 aa13.55□□□□□ -0.24
SHMT2-227ENST00000557269 AKR1B15C9JRZ8 316 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-227ENST00000557269 TRIM66O15016 1216 aa13.55□□□□□ -0.24
SHMT2-227ENST00000557269 LRG1P02750 347 aa13.55□□□□□ -0.24
SHMT2-227ENST00000557269 HNRNPA1P09651 372 aaKnown RBP eCLIP13.55□□□□□ -0.24
SHMT2-227ENST00000557269 HMGA1P17096 107 aaKnown RBP13.55□□□□□ -0.24
SHMT2-227ENST00000557269 KCNA5P22460 613 aa13.55□□□□□ -0.24
SHMT2-227ENST00000557269 HOXA9P31269 272 aa13.55□□□□□ -0.24
SHMT2-227ENST00000557269 HNRNPH3P31942 346 aaKnown RBP13.55□□□□□ -0.24
SHMT2-227ENST00000557269 PRKCIP41743 596 aa13.55□□□□□ -0.24
SHMT2-227ENST00000557269 RGS7P49802 495 aa13.55□□□□□ -0.24
SHMT2-227ENST00000557269 BCAT1P54687 386 aa13.55□□□□□ -0.24
SHMT2-227ENST00000557269 EPHB3P54753 998 aa13.55□□□□□ -0.24
SHMT2-227ENST00000557269 CDR2Q01850 454 aa13.55□□□□□ -0.24
SHMT2-227ENST00000557269 BST2Q10589 180 aaKnown RBP13.55□□□□□ -0.24
SHMT2-227ENST00000557269 STILQ15468 1287 aa13.55□□□□□ -0.24
SHMT2-227ENST00000557269 PMF1Q6P1K2 205 aa13.55□□□□□ -0.24
SHMT2-227ENST00000557269 RTL10Q7L3V2 364 aa13.55□□□□□ -0.24
SHMT2-227ENST00000557269 ZNF571Q7Z3V5 609 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-227ENST00000557269 DNAJB7Q7Z6W7 309 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-227ENST00000557269 DRC7Q8IY82 874 aa13.55□□□□□ -0.24
SHMT2-227ENST00000557269 CMASQ8NFW8 434 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-227ENST00000557269 OR8K1Q8NGG5 319 aa13.55□□□□□ -0.24
SHMT2-227ENST00000557269 SCAMP5Q8TAC9 235 aa13.55□□□□□ -0.24
SHMT2-227ENST00000557269 SPATA17Q96L03 361 aa13.55□□□□□ -0.24
SHMT2-227ENST00000557269 AGPAT1Q99943 283 aa13.55□□□□□ -0.24
SHMT2-227ENST00000557269 LRRC3Q9BY71 257 aa13.55□□□□□ -0.24
SHMT2-227ENST00000557269 UBE2ZQ9H832 354 aaPredicted RBP13.55□□□□□ -0.24
SHMT2-227ENST00000557269 ABHD10Q9NUJ1 306 aa13.55□□□□□ -0.24
SHMT2-227ENST00000557269 DNMT3BQ9UBC3 853 aaKnown RBP13.55□□□□□ -0.24
SHMT2-227ENST00000557269 HESX1Q9UBX0 185 aa13.55□□□□□ -0.24
SHMT2-227ENST00000557269 DPP7Q9UHL4 492 aa13.55□□□□□ -0.24
SHMT2-227ENST00000557269 PIK3R2O00459 728 aa13.54□□□□□ -0.24
SHMT2-227ENST00000557269 XPO1O14980 1071 aaKnown RBP13.54□□□□□ -0.24
SHMT2-227ENST00000557269 SRGAP2BP0DMP2 458 aa13.54□□□□□ -0.24
SHMT2-227ENST00000557269 HOXB8P17481 243 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-227ENST00000557269 ANXA13P27216 316 aa13.54□□□□□ -0.24
SHMT2-227ENST00000557269 KLHL30Q0D2K2 578 aa13.54□□□□□ -0.24
SHMT2-227ENST00000557269 PLD1Q13393 1074 aa13.54□□□□□ -0.24
SHMT2-227ENST00000557269 ARHGAP30Q7Z6I6 1101 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-227ENST00000557269 GRASPQ7Z6J2 395 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-227ENST00000557269 GPR149Q86SP6 731 aa13.54□□□□□ -0.24
SHMT2-227ENST00000557269 TMC8Q8IU68 726 aa13.54□□□□□ -0.24
SHMT2-227ENST00000557269 C1orf131Q8NDD1 294 aaKnown RBP13.54□□□□□ -0.24
SHMT2-227ENST00000557269 SMG7Q92540 1137 aaKnown RBP13.54□□□□□ -0.24
SHMT2-227ENST00000557269 PSMG2Q969U7 264 aa13.54□□□□□ -0.24
SHMT2-227ENST00000557269 CORO1BQ9BR76 489 aa13.54□□□□□ -0.24
SHMT2-227ENST00000557269 UBXN6Q9BZV1 441 aa13.54□□□□□ -0.24
SHMT2-227ENST00000557269 NUCKS1Q9H1E3 243 aaKnown RBP13.54□□□□□ -0.24
SHMT2-227ENST00000557269 LHX5Q9H2C1 402 aa13.54□□□□□ -0.24
SHMT2-227ENST00000557269 ADAM7Q9H2U9 754 aa13.54□□□□□ -0.24
SHMT2-227ENST00000557269 ARHGAP20Q9P2F6 1191 aa13.54□□□□□ -0.24
SHMT2-227ENST00000557269 TJP2Q9UDY2 1190 aa13.54□□□□□ -0.24
SHMT2-227ENST00000557269 MAGED2Q9UNF1 606 aaPredicted RBP13.54□□□□□ -0.24
SHMT2-227ENST00000557269 EYSQ5T1H1 3165 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 GRXCR2A6NFK2 248 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 DDX3XO00571 662 aaKnown RBP eCLIP13.53□□□□□ -0.248e-15■■□□□ 14.3
SHMT2-227ENST00000557269 CYP1A1P04798 512 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-227ENST00000557269 SERPING1P05155 500 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 POU2F2P09086 479 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 SETSIPP0DME0 302 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 CDH5P33151 784 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-227ENST00000557269 CCR2P41597 374 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 PLA2G4AP47712 749 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 PGFP49763 221 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 SLC5A3P53794 718 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 IFRD2Q12894 506 aaPredicted RBP13.53□□□□□ -0.24
SHMT2-227ENST00000557269 VEPH1Q14D04 833 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 MEA1Q16626 185 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 SLC5A9Q2M3M2 681 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 RAB41Q5JT25 222 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 ELMSAN1Q6PJG2 1045 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 DENND5BQ6ZUT9 1274 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 TMEM150AQ86TG1 271 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 ZNF677Q86XU0 584 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 DNAAF5Q86Y56 855 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 NUP93Q8N1F7 819 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 SMRP1Q8NCR6 262 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 CPA5Q8WXQ8 436 aa13.53□□□□□ -0.24
SHMT2-227ENST00000557269 NDRG1Q92597 394 aaKnown RBP13.53□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms