RNA–Protein interactions for RNA: ENST00000556767.1

CCDC88C-212, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 676 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-212ENST00000556767 ZFP37Q9Y6Q3 630 aaPredicted RBP12.13□□□□□ -0.47
CCDC88C-212ENST00000556767 NOTCH4Q99466 2003 aa12.13□□□□□ -0.47
CCDC88C-212ENST00000556767 NRG2O14511 850 aaPredicted RBP12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 MOSPD3O75425 235 aa12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 MICAL2O94851 1124 aa12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 RTN3O95197 1032 aaPredicted RBP12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 ABL1P00519 1130 aa12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 CALCAP01258 141 aa12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 NPR3P17342 541 aa12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 BRD2P25440 801 aaKnown RBP12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 YWHAQP27348 245 aa12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 KLK7P49862 253 aa12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 USP46P62068 366 aa12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 SYCP1Q15431 976 aa12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 STXBP5Q5T5C0 1151 aa12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 ARHGAP17Q68EM7 881 aa12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 LRSAM1Q6UWE0 723 aa12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 CLEC20AQ6ZU45 233 aa12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 UBA3Q8TBC4 463 aa12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 TRMT2BQ96GJ1 504 aaKnown RBP12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 CEP295NLQ96MC4 621 aa12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 DUSP16Q9BY84 665 aa12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 GPR88Q9GZN0 384 aa12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 IL21Q9HBE4 155 aa12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 TRPC7Q9HCX4 862 aa12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 FAM207AQ9NSI2 230 aaPredicted RBP12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 GDE1Q9NZC3 331 aa12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 EPS15L1Q9UBC2 864 aa12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 MUTYHQ9UIF7 546 aa12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 AJAP1Q9UKB5 411 aaPredicted RBP12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 TSPAN16Q9UKR8 245 aa12.12□□□□□ -0.47
CCDC88C-212ENST00000556767 LRRC10BA6NIK2 292 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 TNFRSF10AO00220 468 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 DLL1O00548 723 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 F11P03951 625 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 SLC5A3P53794 718 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 TAF10Q12962 218 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 DRAP1Q14919 205 aaPredicted RBP12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 KLHDC7AQ5VTJ3 777 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 PARM1Q6UWI2 310 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 MTSS1LQ765P7 747 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 GPIHBP1Q8IV16 184 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 ANKRD52Q8NB46 1076 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 ZMIZ2Q8NF64 920 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 NEK11Q8NG66 645 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 SCAMP5Q8TAC9 235 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 ZSCAN18Q8TBC5 510 aaPredicted RBP12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 RSAD2Q8WXG1 361 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 TFAP2BQ92481 460 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 FBXO32Q969P5 355 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 MYRFLQ96LU7 910 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 ZSWIM3Q96MP5 696 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 SLITRK1Q96PX8 696 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 KXD1Q9BQD3 176 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 TASP1Q9H6P5 420 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 KCNK12Q9HB15 430 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 CSNK1G1Q9HCP0 422 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 TRPM5Q9NZQ8 1165 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 IGSF9Q9P2J2 1179 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 FHOD1Q9Y613 1164 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 NUMBLQ9Y6R0 609 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 COL6A3P12111 3177 aa12.11□□□□□ -0.47
CCDC88C-212ENST00000556767 M0QYV0 167 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 O00370 1275 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 FOXN3O00409 490 aaPredicted RBP12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 CYP26A1O43174 497 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 THAP12O43422 761 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 MED7O43513 233 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 PNMA6AP0CW24 399 aaPredicted RBP12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 UCHL3P15374 230 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 RFX1P22670 979 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 GNA15P30679 374 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 ZNF132P52740 706 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 BCAT1P54687 386 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 POLR2FP61218 127 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 PTK2Q05397 1052 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 PDE4CQ08493 712 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 STILQ15468 1287 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 FAM78AQ5JUQ0 283 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 TXNDC8Q6A555 127 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 APTXQ7Z2E3 356 aaKnown RBP12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 TMEM150AQ86TG1 271 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 PIGZQ86VD9 579 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 TTC30AQ86WT1 665 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 MAB21L3Q8N8X9 362 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 RNF214Q8ND24 703 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 TTC16Q8NEE8 873 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 SHC3Q92529 594 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 SMARCD2Q92925 531 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 FBXO44Q9H4M3 255 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 ZFP14Q9HCL3 533 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 ACP6Q9NPH0 428 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 NLRC4Q9NPP4 1024 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 PLCB1Q9NQ66 1216 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 CHORDC1Q9UHD1 332 aaPredicted RBP12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 CNTN6Q9UQ52 1028 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 DOCK8Q8NF50 2099 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 EYSQ5T1H1 3165 aa12.1□□□□□ -0.47
CCDC88C-212ENST00000556767 DPYSL4O14531 572 aa12.09□□□□□ -0.47
CCDC88C-212ENST00000556767 TEX33O43247 280 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 166.8 ms