RNA–Protein interactions for RNA: ENST00000553950.5

SHMT2-210, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 584 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-210ENST00000553950 CLSTN3Q9BQT9 956 aa15.31■□□□□ 0.04
SHMT2-210ENST00000553950 LRRC4Q9HBW1 653 aa15.31■□□□□ 0.04
SHMT2-210ENST00000553950 MRPL47Q9HD33 250 aaKnown RBP15.31■□□□□ 0.04
SHMT2-210ENST00000553950 AVENQ9NQS1 362 aaPredicted RBP15.31■□□□□ 0.04
SHMT2-210ENST00000553950 KCND1Q9NSA2 647 aa15.31■□□□□ 0.04
SHMT2-210ENST00000553950 ADAM22Q9P0K1 906 aa15.31■□□□□ 0.04
SHMT2-210ENST00000553950 PPP2R2CQ9Y2T4 447 aa15.31■□□□□ 0.04
SHMT2-210ENST00000553950 A0A0A6YYK5 440 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-210ENST00000553950 C2orf71A6NGG8 1288 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 BTNL10A8MVZ5 291 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 CLDN5O00501 218 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 NCANO14594 1321 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 GRM6O15303 877 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 TEX28O15482 410 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 ABLIM3O94929 683 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 ARHGEF15O94989 841 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 GLUD1P00367 558 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 CALCAP01258 141 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 FTLP02792 175 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-210ENST00000553950 DESP17661 470 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 BDNFP23560 247 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 MSNP26038 577 aaKnown RBP15.3■□□□□ 0.04
SHMT2-210ENST00000553950 GRIK1P39086 918 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 VEPH1Q14D04 833 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 ARHGAP29Q52LW3 1261 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 PAQR9Q6ZVX9 377 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 LRRTM3Q86VH5 581 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 ZSCAN30Q86W11 494 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 PALB2Q86YC2 1186 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 MCOLN2Q8IZK6 566 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 SIX6OS1Q8N1H7 587 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 MRPL43Q8N983 215 aaKnown RBP15.3■□□□□ 0.04
SHMT2-210ENST00000553950 UBA3Q8TBC4 463 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 MICAL1Q8TDZ2 1067 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 CPA5Q8WXQ8 436 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 RFFLQ8WZ73 363 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 C18orf8Q96DM3 657 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 PGLYRP2Q96PD5 576 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 CDCA3Q99618 268 aaPredicted RBP15.3■□□□□ 0.04
SHMT2-210ENST00000553950 C11orf70Q9BRQ4 267 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 DESI2Q9BSY9 194 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 SLC4A5Q9BY07 1137 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 ST7Q9NRC1 585 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 TMLHEQ9NVH6 421 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 COMMD8Q9NX08 183 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 UVRAGQ9P2Y5 699 aa15.3■□□□□ 0.04
SHMT2-210ENST00000553950 TMCO5BA8MYB1 307 aa15.29■□□□□ 0.04
SHMT2-210ENST00000553950 PRRG1O14668 218 aa15.29■□□□□ 0.04
SHMT2-210ENST00000553950 ZNF263O14978 683 aa15.29■□□□□ 0.04
SHMT2-210ENST00000553950 PJA2O43164 708 aa15.29■□□□□ 0.04
SHMT2-210ENST00000553950 RTN3O95197 1032 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-210ENST00000553950 CNPP09543 421 aaKnown RBP15.29■□□□□ 0.04
SHMT2-210ENST00000553950 HAPLN1P10915 354 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-210ENST00000553950 RPL17P18621 184 aaKnown RBP15.29■□□□□ 0.04
SHMT2-210ENST00000553950 KLRC2P26717 231 aa15.29■□□□□ 0.04
SHMT2-210ENST00000553950 GABRB2P47870 512 aa15.29■□□□□ 0.04
SHMT2-210ENST00000553950 RPL34P49207 117 aaKnown RBP15.29■□□□□ 0.04
SHMT2-210ENST00000553950 MAP3K7CLP57077 242 aa15.29■□□□□ 0.04
SHMT2-210ENST00000553950 GPC5P78333 572 aa15.29■□□□□ 0.04
SHMT2-210ENST00000553950 ADCY1Q08828 1119 aa15.29■□□□□ 0.04
SHMT2-210ENST00000553950 MGAT5BQ3V5L5 792 aa15.29■□□□□ 0.04
SHMT2-210ENST00000553950 PTPN20Q4JDL3 420 aa15.29■□□□□ 0.04
SHMT2-210ENST00000553950 RNF19BQ6ZMZ0 732 aa15.29■□□□□ 0.04
SHMT2-210ENST00000553950 MMS22LQ6ZRQ5 1243 aa15.29■□□□□ 0.04
SHMT2-210ENST00000553950 PIGZQ86VD9 579 aa15.29■□□□□ 0.04
SHMT2-210ENST00000553950 SCML4Q8N228 414 aa15.29■□□□□ 0.04
SHMT2-210ENST00000553950 C3orf20Q8ND61 904 aa15.29■□□□□ 0.04
SHMT2-210ENST00000553950 HDAC7Q8WUI4 952 aa15.29■□□□□ 0.04
SHMT2-210ENST00000553950 SPATA17Q96L03 361 aa15.29■□□□□ 0.04
SHMT2-210ENST00000553950 KLHL5Q96PQ7 755 aa15.29■□□□□ 0.04
SHMT2-210ENST00000553950 SEPT5Q99719 369 aaPredicted RBP15.29■□□□□ 0.04
SHMT2-210ENST00000553950 FBXO44Q9H4M3 255 aa15.29■□□□□ 0.04
SHMT2-210ENST00000553950 CNGB3Q9NQW8 809 aa15.29■□□□□ 0.04
SHMT2-210ENST00000553950 CFHP08603 1231 aa15.28■□□□□ 0.04
SHMT2-210ENST00000553950 SRGAP2BP0DMP2 458 aa15.28■□□□□ 0.04
SHMT2-210ENST00000553950 ABCB4P21439 1286 aa15.28■□□□□ 0.04
SHMT2-210ENST00000553950 CYP2F1P24903 491 aa15.28■□□□□ 0.04
SHMT2-210ENST00000553950 SSTR3P32745 418 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-210ENST00000553950 ALDH1A3P47895 512 aa15.28■□□□□ 0.04
SHMT2-210ENST00000553950 GALCP54803 685 aa15.28■□□□□ 0.04
SHMT2-210ENST00000553950 ERVFC1P60507 584 aa15.28■□□□□ 0.04
SHMT2-210ENST00000553950 ZNF268Q14587 947 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-210ENST00000553950 CCDC142Q17RM4 750 aa15.28■□□□□ 0.04
SHMT2-210ENST00000553950 DNAJC24Q6P3W2 148 aa15.28■□□□□ 0.04
SHMT2-210ENST00000553950 RSPO2Q6UXX9 243 aaPredicted RBP15.28■□□□□ 0.04
SHMT2-210ENST00000553950 TMEM110Q86TL2 294 aa15.28■□□□□ 0.04
SHMT2-210ENST00000553950 SCN4BQ8IWT1 228 aa15.28■□□□□ 0.04
SHMT2-210ENST00000553950 TCEAL8Q8IYN2 117 aa15.28■□□□□ 0.04
SHMT2-210ENST00000553950 KIAA1524Q8TCG1 905 aa15.28■□□□□ 0.04
SHMT2-210ENST00000553950 GDPD5Q8WTR4 605 aa15.28■□□□□ 0.04
SHMT2-210ENST00000553950 AUTS2Q8WXX7 1259 aa15.28■□□□□ 0.04
SHMT2-210ENST00000553950 IRGQQ8WZA9 623 aa15.28■□□□□ 0.04
SHMT2-210ENST00000553950 GOLGA1Q92805 767 aa15.28■□□□□ 0.04
SHMT2-210ENST00000553950 MRPL38Q96DV4 380 aaKnown RBP15.28■□□□□ 0.04
SHMT2-210ENST00000553950 CPXM1Q96SM3 734 aa15.28■□□□□ 0.04
SHMT2-210ENST00000553950 SMOQ99835 787 aa15.28■□□□□ 0.04
SHMT2-210ENST00000553950 LPIN3Q9BQK8 851 aa15.28■□□□□ 0.04
SHMT2-210ENST00000553950 PLEKHA4Q9H4M7 779 aa15.28■□□□□ 0.04
SHMT2-210ENST00000553950 CYP4F11Q9HBI6 524 aa15.28■□□□□ 0.04
SHMT2-210ENST00000553950 PARVAQ9NVD7 372 aa15.28■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms