RNA–Protein interactions for RNA: ENST00000548539.1

VPS29-205, Transcript of VPS29, retromer complex component, humanhuman

TSL 3

Gene VPS29, Length 598 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-205ENST00000548539 SLC29A2Q14542 456 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 IQCB1Q15051 598 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 PDCD2Q16342 344 aaPredicted RBP4.91□□□□□ -1.62
VPS29-205ENST00000548539 PGBD2Q6P3X8 592 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 LAYNQ6UX15 382 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 CATSPERGQ6ZRH7 1159 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 SPATA31D4Q6ZUB0 917 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 KCTD20Q7Z5Y7 419 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 ARHGEF19Q8IW93 802 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 ATG16L2Q8NAA4 619 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 IPO4Q8TEX9 1081 aaKnown RBP4.91□□□□□ -1.62
VPS29-205ENST00000548539 IPCEF1Q8WWN9 437 aaPredicted RBP4.91□□□□□ -1.62
VPS29-205ENST00000548539 CCT6BQ92526 530 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 COQ10AQ96MF6 247 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 HEPHQ9BQS7 1158 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 STK33Q9BYT3 514 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 RNPEPQ9H4A4 650 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 SYBUQ9NX95 663 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 CTTNBP2NLQ9P2B4 639 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 FRMD4BQ9Y2L6 1034 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 ZBTB32Q9Y2Y4 487 aaPredicted RBP4.91□□□□□ -1.62
VPS29-205ENST00000548539 MTO1Q9Y2Z2 717 aaKnown RBP4.91□□□□□ -1.62
VPS29-205ENST00000548539 PCDHGB3Q9Y5G1 929 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 RAD54BQ9Y620 910 aa4.91□□□□□ -1.62
VPS29-205ENST00000548539 EPN1Q9Y6I3 576 aaPredicted RBP4.91□□□□□ -1.62
VPS29-205ENST00000548539 A0A087WZ62 844 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 TMEM200CA6NKL6 621 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 CLCA1A8K7I4 914 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 AHRRA9YTQ3 701 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 hCG_1984214I3L0E3 225 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 A1BGP04217 495 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 TYRP1P17643 537 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 BTF3P20290 206 aaKnown RBP4.9□□□□□ -1.63
VPS29-205ENST00000548539 PDIA3P30101 505 aaKnown RBP4.9□□□□□ -1.63
VPS29-205ENST00000548539 CXCR5P32302 372 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 VIPR2P41587 438 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 GCLCP48506 637 aaPredicted RBP4.9□□□□□ -1.63
VPS29-205ENST00000548539 PPM1FP49593 454 aaPredicted RBP4.9□□□□□ -1.63
VPS29-205ENST00000548539 TCF15Q12870 199 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 BLMHQ13867 455 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 ARHGEF7Q14155 803 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 ZIK1Q3SY52 487 aaPredicted RBP4.9□□□□□ -1.63
VPS29-205ENST00000548539 LCE1AQ5T7P2 110 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 CACHD1Q5VU97 1274 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 FOXR2Q6PJQ5 311 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 USP49Q70CQ1 688 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 MAPKAPK5Q8IW41 473 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 SDR16C5Q8N3Y7 309 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 GLIS1Q8NBF1 620 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 CCDC150Q8NCX0 1101 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 SCLT1Q96NL6 688 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 PPP1R9BQ96SB3 815 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 MESP1Q9BRJ9 268 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 MAGEB5Q9BZ81 275 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 DDX24Q9GZR7 859 aaKnown RBP eCLIP4.9□□□□□ -1.63
VPS29-205ENST00000548539 OBP2BQ9NPH6 170 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 ZSCAN32Q9NX65 697 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 LUZP4Q9P127 313 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 LRFN1Q9P244 771 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 MRPS17Q9Y2R5 130 aaKnown RBP4.9□□□□□ -1.63
VPS29-205ENST00000548539 MAP3K2Q9Y2U5 619 aa4.9□□□□□ -1.63
VPS29-205ENST00000548539 LOC102723971A0A1B0GUV8 181 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 hCG_1642624A0A1W2PR95 340 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 AQP12BA6NM10 295 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 LGALS16A8MUM7 142 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 RNASET2O00584 256 aaKnown RBP4.89□□□□□ -1.63
VPS29-205ENST00000548539 AREL1O15033 823 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 SKAP2O75563 359 aaPredicted RBP4.89□□□□□ -1.63
VPS29-205ENST00000548539 SUN1O94901 812 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 ZFPL1O95159 310 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 CSTBP04080 98 aaKnown RBP4.89□□□□□ -1.63
VPS29-205ENST00000548539 ELANEP08246 267 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 ATXN1LP0C7T5 689 aaKnown RBP4.89□□□□□ -1.63
VPS29-205ENST00000548539 HKR1P10072 659 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 XRCC6P12956 609 aaKnown RBP eCLIP4.89□□□□□ -1.63
VPS29-205ENST00000548539 KCNA2P16389 499 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 TPH1P17752 444 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 PTDSS1P48651 473 aaKnown RBP4.89□□□□□ -1.63
VPS29-205ENST00000548539 PXNP49023 591 aaPredicted RBP4.89□□□□□ -1.63
VPS29-205ENST00000548539 CPT1AP50416 773 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 SEC24CP53992 1094 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 WNT3P56703 355 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 FAM189BP81408 668 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 GALNT1Q10472 559 aaPredicted RBP4.89□□□□□ -1.63
VPS29-205ENST00000548539 KCNAB1Q14722 419 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 PFKFB4Q16877 469 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 CD300EQ496F6 205 aaPredicted RBP4.89□□□□□ -1.63
VPS29-205ENST00000548539 PREPLQ4J6C6 727 aaPredicted RBP4.89□□□□□ -1.63
VPS29-205ENST00000548539 PLAG1Q6DJT9 500 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 CRTC1Q6UUV9 634 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 TMEM108Q6UXF1 575 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 GDF7Q7Z4P5 450 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 NKAPQ8N5F7 415 aaKnown RBP4.89□□□□□ -1.63
VPS29-205ENST00000548539 VGLL2Q8N8G2 317 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 SIMC1Q8NDZ2 872 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 POC1BQ8TC44 478 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 LINC00476Q8WZB0 136 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 SMG7Q92540 1137 aaKnown RBP4.89□□□□□ -1.63
VPS29-205ENST00000548539 TMEM125Q96AQ2 219 aa4.89□□□□□ -1.63
VPS29-205ENST00000548539 EVI5LQ96CN4 794 aa4.89□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms