RNA–Protein interactions for RNA: ENST00000546974.1

COL2A1-209, Transcript of collagen type II alpha 1 chain, humanhuman

TSL 1 (best)

Gene COL2A1, Length 703 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL2A1-209ENST00000546974 CHFRQ96EP1 664 aa15.34■□□□□ 0.05
COL2A1-209ENST00000546974 C8orf48Q96LL4 319 aa15.34■□□□□ 0.05
COL2A1-209ENST00000546974 RAB23Q9ULC3 237 aa15.34■□□□□ 0.05
COL2A1-209ENST00000546974 HPSEQ9Y251 543 aa15.34■□□□□ 0.05
COL2A1-209ENST00000546974 RALGAPA1Q6GYQ0 2036 aa15.34■□□□□ 0.05
COL2A1-209ENST00000546974 C2orf78A6NCI8 922 aa15.33■□□□□ 0.04
COL2A1-209ENST00000546974 CHURC1-FNTBB4DL54 471 aa15.33■□□□□ 0.04
COL2A1-209ENST00000546974 PDXKO00764 312 aa15.33■□□□□ 0.04
COL2A1-209ENST00000546974 C4BPAP04003 597 aaKnown RBP15.33■□□□□ 0.04
COL2A1-209ENST00000546974 HDCP19113 662 aa15.33■□□□□ 0.04
COL2A1-209ENST00000546974 FNTBP49356 437 aa15.33■□□□□ 0.04
COL2A1-209ENST00000546974 CASP4P49662 377 aa15.33■□□□□ 0.04
COL2A1-209ENST00000546974 USP46P62068 366 aa15.33■□□□□ 0.04
COL2A1-209ENST00000546974 NOP14P78316 857 aaKnown RBP15.33■□□□□ 0.04
COL2A1-209ENST00000546974 KRT85P78386 507 aa15.33■□□□□ 0.04
COL2A1-209ENST00000546974 KCNB1Q14721 858 aa15.33■□□□□ 0.04
COL2A1-209ENST00000546974 TDRD10Q5VZ19 366 aaKnown RBP15.33■□□□□ 0.04
COL2A1-209ENST00000546974 FSTL4Q6MZW2 842 aa15.33■□□□□ 0.04
COL2A1-209ENST00000546974 CPA6Q8N4T0 437 aa15.33■□□□□ 0.04
COL2A1-209ENST00000546974 ARL14EPQ8N8R7 260 aaPredicted RBP15.33■□□□□ 0.04
COL2A1-209ENST00000546974 EXOC4Q96A65 974 aa15.33■□□□□ 0.04
COL2A1-209ENST00000546974 SPATA32Q96LK8 384 aa15.33■□□□□ 0.04
COL2A1-209ENST00000546974 ELOVL4Q9GZR5 314 aa15.33■□□□□ 0.04
COL2A1-209ENST00000546974 KCTD10Q9H3F6 313 aa15.33■□□□□ 0.04
COL2A1-209ENST00000546974 DPEP3Q9H4B8 488 aa15.33■□□□□ 0.04
COL2A1-209ENST00000546974 ECT2Q9H8V3 914 aa15.33■□□□□ 0.04
COL2A1-209ENST00000546974 DUS2Q9NX74 493 aaKnown RBP15.33■□□□□ 0.04
COL2A1-209ENST00000546974 TRPM5Q9NZQ8 1165 aa15.33■□□□□ 0.04
COL2A1-209ENST00000546974 NXF1Q9UBU9 619 aaKnown RBP15.33■□□□□ 0.04
COL2A1-209ENST00000546974 GMEB2Q9UKD1 530 aa15.33■□□□□ 0.04
COL2A1-209ENST00000546974 ARHGAP26Q9UNA1 814 aa15.33■□□□□ 0.04
COL2A1-209ENST00000546974 ZDHHC9Q9Y397 364 aa15.33■□□□□ 0.04
COL2A1-209ENST00000546974 SPAG17Q6Q759 2223 aa15.32■□□□□ 0.04
COL2A1-209ENST00000546974 LRRIQ3A6PVS8 624 aaPredicted RBP15.32■□□□□ 0.04
COL2A1-209ENST00000546974 A8MXQ7 604 aa15.32■□□□□ 0.04
COL2A1-209ENST00000546974 F8VP50 259 aa15.32■□□□□ 0.04
COL2A1-209ENST00000546974 ATG13O75143 517 aa15.32■□□□□ 0.04
COL2A1-209ENST00000546974 DRD1P21728 446 aa15.32■□□□□ 0.04
COL2A1-209ENST00000546974 GJA4P35212 333 aa15.32■□□□□ 0.04
COL2A1-209ENST00000546974 IFNAR2P48551 515 aa15.32■□□□□ 0.04
COL2A1-209ENST00000546974 GALK1P51570 392 aa15.32■□□□□ 0.04
COL2A1-209ENST00000546974 DMWDQ09019 674 aa15.32■□□□□ 0.04
COL2A1-209ENST00000546974 BIRC3Q13489 604 aa15.32■□□□□ 0.04
COL2A1-209ENST00000546974 NCOA4Q13772 614 aa15.32■□□□□ 0.04
COL2A1-209ENST00000546974 PUM1Q14671 1186 aaKnown RBP eCLIP15.32■□□□□ 0.04
COL2A1-209ENST00000546974 EML3Q32P44 896 aa15.32■□□□□ 0.04
COL2A1-209ENST00000546974 LAIR1Q6GTX8 287 aa15.32■□□□□ 0.04
COL2A1-209ENST00000546974 B3GALNT2Q8NCR0 500 aa15.32■□□□□ 0.04
COL2A1-209ENST00000546974 SH3RF2Q8TEC5 729 aa15.32■□□□□ 0.04
COL2A1-209ENST00000546974 ATP2A3Q93084 1043 aa15.32■□□□□ 0.04
COL2A1-209ENST00000546974 C2orf42Q9NWW7 574 aa15.32■□□□□ 0.04
COL2A1-209ENST00000546974 MYH10P35580 1976 aa15.32■□□□□ 0.04
COL2A1-209ENST00000546974 FAM237AA0A1B0GTK4 181 aa15.31■□□□□ 0.04
COL2A1-209ENST00000546974 HRO43593 1189 aa15.31■□□□□ 0.04
COL2A1-209ENST00000546974 EGFP01133 1207 aa15.31■□□□□ 0.04
COL2A1-209ENST00000546974 RPN1P04843 607 aaKnown RBP15.31■□□□□ 0.04
COL2A1-209ENST00000546974 TGM1P22735 817 aa15.31■□□□□ 0.04
COL2A1-209ENST00000546974 SYKP43405 635 aa15.31■□□□□ 0.04
COL2A1-209ENST00000546974 NR1H3Q13133 447 aa15.31■□□□□ 0.04
COL2A1-209ENST00000546974 SIM2Q14190 667 aaPredicted RBP15.31■□□□□ 0.04
COL2A1-209ENST00000546974 ZNF699Q32M78 642 aa15.31■□□□□ 0.04
COL2A1-209ENST00000546974 FBXO43Q4G163 708 aa15.31■□□□□ 0.04
COL2A1-209ENST00000546974 ZNF667Q5HYK9 610 aa15.31■□□□□ 0.04
COL2A1-209ENST00000546974 PRR23BQ6ZRT6 265 aa15.31■□□□□ 0.04
COL2A1-209ENST00000546974 WDR5BQ86VZ2 330 aa15.31■□□□□ 0.04
COL2A1-209ENST00000546974 KIAA1958Q8N8K9 716 aa15.31■□□□□ 0.04
COL2A1-209ENST00000546974 P2RY13Q9BPV8 354 aa15.31■□□□□ 0.04
COL2A1-209ENST00000546974 B3GNT5Q9BYG0 378 aa15.31■□□□□ 0.04
COL2A1-209ENST00000546974 ZNF518BQ9C0D4 1074 aa15.31■□□□□ 0.04
COL2A1-209ENST00000546974 DLL3Q9NYJ7 618 aa15.31■□□□□ 0.04
COL2A1-209ENST00000546974 WNT6Q9Y6F9 365 aa15.31■□□□□ 0.04
COL2A1-209ENST00000546974 SDK1Q7Z5N4 2213 aa15.31■□□□□ 0.04
COL2A1-209ENST00000546974 ZNF840PA6NDX5 716 aa15.3■□□□□ 0.04
COL2A1-209ENST00000546974 KIF20AO95235 890 aa15.3■□□□□ 0.04
COL2A1-209ENST00000546974 VNN1O95497 513 aa15.3■□□□□ 0.04
COL2A1-209ENST00000546974 NR3C1P04150 777 aa15.3■□□□□ 0.04
COL2A1-209ENST00000546974 RETP07949 1114 aa15.3■□□□□ 0.04
COL2A1-209ENST00000546974 SDHBP21912 280 aa15.3■□□□□ 0.04
COL2A1-209ENST00000546974 CACNA2D1P54289 1103 aa15.3■□□□□ 0.04
COL2A1-209ENST00000546974 CDH8P55286 799 aa15.3■□□□□ 0.04
COL2A1-209ENST00000546974 SLC7A9P82251 487 aa15.3■□□□□ 0.04
COL2A1-209ENST00000546974 SGSM1Q2NKQ1 1148 aa15.3■□□□□ 0.04
COL2A1-209ENST00000546974 HEATR6Q6AI08 1181 aaKnown RBP15.3■□□□□ 0.04
COL2A1-209ENST00000546974 PKN3Q6P5Z2 889 aa15.3■□□□□ 0.04
COL2A1-209ENST00000546974 NUP93Q8N1F7 819 aa15.3■□□□□ 0.04
COL2A1-209ENST00000546974 TTC16Q8NEE8 873 aa15.3■□□□□ 0.04
COL2A1-209ENST00000546974 TMC2Q8TDI7 906 aa15.3■□□□□ 0.04
COL2A1-209ENST00000546974 CD101Q93033 1021 aa15.3■□□□□ 0.04
COL2A1-209ENST00000546974 CCDC47Q96A33 483 aaKnown RBP15.3■□□□□ 0.04
COL2A1-209ENST00000546974 TNIP3Q96KP6 325 aa15.3■□□□□ 0.04
COL2A1-209ENST00000546974 SLITRK1Q96PX8 696 aa15.3■□□□□ 0.04
COL2A1-209ENST00000546974 SMYD3Q9H7B4 428 aa15.3■□□□□ 0.04
COL2A1-209ENST00000546974 FBRSL1Q9HCM7 1045 aaKnown RBP15.3■□□□□ 0.04
COL2A1-209ENST00000546974 TMEM30AQ9NV96 361 aa15.3■□□□□ 0.04
COL2A1-209ENST00000546974 MYO16Q9Y6X6 1858 aa15.3■□□□□ 0.04
COL2A1-209ENST00000546974 MYOFQ9NZM1 2061 aa15.29■□□□□ 0.04
COL2A1-209ENST00000546974 ATP8B3O60423 1300 aa15.29■□□□□ 0.04
COL2A1-209ENST00000546974 CCDC163A0A0D9SF12 145 aa15.29■□□□□ 0.04
COL2A1-209ENST00000546974 PRR5-ARHGAP8B1AHC4 643 aa15.29■□□□□ 0.04
COL2A1-209ENST00000546974 LEFTY2O00292 366 aa15.29■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 32.6 ms