RNA–Protein interactions for RNA: ENST00000546588.1

VPS29-203, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 1,059 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-203ENST00000546588 MTF1Q14872 753 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 DRAP1Q14919 205 aaPredicted RBP9.01□□□□□ -0.97
VPS29-203ENST00000546588 TCEAL1Q15170 157 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 ZRSR2Q15696 482 aaKnown RBP9.01□□□□□ -0.97
VPS29-203ENST00000546588 SGSM1Q2NKQ1 1148 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 SDE2Q6IQ49 451 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 TOGARAM2Q6ZUX3 1019 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 ANKS3Q6ZW76 656 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 ARHGEF19Q8IW93 802 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 TMEM192Q8IY95 271 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 NKD1Q969G9 470 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 NXPE3Q969Y0 559 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 CCDC127Q96BQ5 260 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 ANKRD36BP1Q96IX9 119 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 PPP1R13BQ96KQ4 1090 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 ACAP3Q96P50 834 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 SPAG5Q96R06 1193 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 POP1Q99575 1024 aaKnown RBP9.01□□□□□ -0.97
VPS29-203ENST00000546588 TCHPQ9BT92 498 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 CCDC94Q9BW85 323 aaPredicted RBP9.01□□□□□ -0.97
VPS29-203ENST00000546588 NT5C1AQ9BXI3 368 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 MTMR12Q9C0I1 747 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 APOBEC3GQ9HC16 384 aaKnown RBP9.01□□□□□ -0.97
VPS29-203ENST00000546588 NLRC4Q9NPP4 1024 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 MYO1AQ9UBC5 1043 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 SIX4Q9UIU6 781 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 INTUQ9ULD6 942 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 R3HCC1Q9Y3T6 440 aaKnown RBP9.01□□□□□ -0.97
VPS29-203ENST00000546588 EPN1Q9Y6I3 576 aaPredicted RBP9.01□□□□□ -0.97
VPS29-203ENST00000546588 TET1Q8NFU7 2136 aa9.01□□□□□ -0.97
VPS29-203ENST00000546588 VWA8A3KMH1 1905 aa9□□□□□ -0.97
VPS29-203ENST00000546588 A0A0U1RQF3 1178 aa9□□□□□ -0.97
VPS29-203ENST00000546588 ANO9A1A5B4 782 aa9□□□□□ -0.97
VPS29-203ENST00000546588 USP27XA6NNY8 438 aa9□□□□□ -0.97
VPS29-203ENST00000546588 LACTBL1A8MY62 500 aa9□□□□□ -0.97
VPS29-203ENST00000546588 ENC1O14682 589 aa9□□□□□ -0.97
VPS29-203ENST00000546588 LRRN2O75325 713 aa9□□□□□ -0.97
VPS29-203ENST00000546588 PAGE1O75459 146 aa9□□□□□ -0.97
VPS29-203ENST00000546588 RPS6KA5O75582 802 aa9□□□□□ -0.97
VPS29-203ENST00000546588 SGPL1O95470 568 aa9□□□□□ -0.97
VPS29-203ENST00000546588 GHRHP01286 108 aa9□□□□□ -0.97
VPS29-203ENST00000546588 CXCL10P02778 98 aa9□□□□□ -0.97
VPS29-203ENST00000546588 NFICP08651 508 aa9□□□□□ -0.97
VPS29-203ENST00000546588 TFE3P19532 575 aaPredicted RBP9□□□□□ -0.97
VPS29-203ENST00000546588 ITPKAP23677 461 aa9□□□□□ -0.97
VPS29-203ENST00000546588 LRPAP1P30533 357 aa9□□□□□ -0.97
VPS29-203ENST00000546588 MATR3P43243 847 aaKnown RBP eCLIP9□□□□□ -0.97
VPS29-203ENST00000546588 GATA4P43694 442 aa9□□□□□ -0.97
VPS29-203ENST00000546588 KIF11P52732 1056 aa9□□□□□ -0.97
VPS29-203ENST00000546588 NRLP54845 237 aa9□□□□□ -0.97
VPS29-203ENST00000546588 PCBP4P57723 403 aaKnown RBP9□□□□□ -0.97
VPS29-203ENST00000546588 KRT83P78385 493 aa9□□□□□ -0.97
VPS29-203ENST00000546588 TMEM62Q0P6H9 643 aa9□□□□□ -0.97
VPS29-203ENST00000546588 INCA1Q0VD86 236 aa9□□□□□ -0.97
VPS29-203ENST00000546588 LPIN1Q14693 890 aa9□□□□□ -0.97
VPS29-203ENST00000546588 NAB2Q15742 525 aa9□□□□□ -0.97
VPS29-203ENST00000546588 CCDC81Q6ZN84 652 aa9□□□□□ -0.97
VPS29-203ENST00000546588 ZNF677Q86XU0 584 aa9□□□□□ -0.97
VPS29-203ENST00000546588 THNSL1Q8IYQ7 743 aa9□□□□□ -0.97
VPS29-203ENST00000546588 LRRC52Q8N7C0 313 aa9□□□□□ -0.97
VPS29-203ENST00000546588 TMEM102Q8N9M5 508 aaPredicted RBP9□□□□□ -0.97
VPS29-203ENST00000546588 GSTCDQ8NEC7 633 aa9□□□□□ -0.97
VPS29-203ENST00000546588 DDX1Q92499 740 aaKnown RBP9□□□□□ -0.97
VPS29-203ENST00000546588 ZNF668Q96K58 619 aaPredicted RBP9□□□□□ -0.97
VPS29-203ENST00000546588 SCLT1Q96NL6 688 aa9□□□□□ -0.97
VPS29-203ENST00000546588 NECAB3Q96P71 396 aaPredicted RBP9□□□□□ -0.97
VPS29-203ENST00000546588 EIF2AQ9BY44 585 aaKnown RBP9□□□□□ -0.97
VPS29-203ENST00000546588 UBE2OQ9C0C9 1292 aaKnown RBP9□□□□□ -0.97
VPS29-203ENST00000546588 HAUS4Q9H6D7 363 aa9□□□□□ -0.97
VPS29-203ENST00000546588 AGO3Q9H9G7 860 aaKnown RBP9□□□□□ -0.97
VPS29-203ENST00000546588 RRAGDQ9NQL2 400 aaPredicted RBP9□□□□□ -0.97
VPS29-203ENST00000546588 C1orf112Q9NSG2 853 aa9□□□□□ -0.97
VPS29-203ENST00000546588 TRMT13Q9NUP7 481 aaKnown RBP9□□□□□ -0.97
VPS29-203ENST00000546588 NOCTQ9UK39 431 aaKnown RBP9□□□□□ -0.97
VPS29-203ENST00000546588 ST3GAL5Q9UNP4 418 aa9□□□□□ -0.97
VPS29-203ENST00000546588 PIN4Q9Y237 131 aaKnown RBP9□□□□□ -0.97
VPS29-203ENST00000546588 IPPQ9Y573 584 aa9□□□□□ -0.97
VPS29-203ENST00000546588 RECQL4O94761 1208 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 NPTXRO95502 500 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 CST3P01034 146 aaPredicted RBP8.99□□□□□ -0.97
VPS29-203ENST00000546588 TNNC2P02585 160 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 PLEKP08567 350 aaPredicted RBP8.99□□□□□ -0.97
VPS29-203ENST00000546588 FAM163BP0C2L3 166 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 TMEM191BP0C7N4 346 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 GZMAP12544 262 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 ATF7P17544 494 aaPredicted RBP8.99□□□□□ -0.97
VPS29-203ENST00000546588 FGFR4P22455 802 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 PAX3P23760 479 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 THPOP40225 353 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 ARHGAP25P42331 645 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 PIK3CAP42336 1068 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 ASPAP45381 313 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 VAV2P52735 878 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 FAM189BP81408 668 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 LMNB2Q03252 620 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 KLHL30Q0D2K2 578 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 FAAP100Q0VG06 881 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 CUL2Q13617 745 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 RAPGEF1Q13905 1077 aa8.99□□□□□ -0.97
VPS29-203ENST00000546588 MBTPS1Q14703 1052 aa8.99□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms