RNA–Protein interactions for RNA: ENST00000545608.5

USP28-215, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 733 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-215ENST00000545608 FOXD4L5Q5VV16 416 aaPredicted RBP9.06□□□□□ -0.96
USP28-215ENST00000545608 CC2D1AQ6P1N0 951 aaPredicted RBP9.06□□□□□ -0.96
USP28-215ENST00000545608 SHC4Q6S5L8 630 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 EPM2AIP1Q7L775 607 aaPredicted RBP9.06□□□□□ -0.96
USP28-215ENST00000545608 WDR5BQ86VZ2 330 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 ZNF507Q8TCN5 953 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 FOXD4L4Q8WXT5 416 aaPredicted RBP9.06□□□□□ -0.96
USP28-215ENST00000545608 MYLPFQ96A32 169 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 DHX58Q96C10 678 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 TRMT2BQ96GJ1 504 aaKnown RBP9.06□□□□□ -0.96
USP28-215ENST00000545608 FUBP3Q96I24 572 aaKnown RBP eCLIP9.06□□□□□ -0.96
USP28-215ENST00000545608 SYT15Q9BQS2 421 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 PRR14Q9BWN1 585 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 BACH2Q9BYV9 841 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 LRRC27Q9C0I9 530 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 TRPC7Q9HCX4 862 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 CRTAC1Q9NQ79 661 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 GCNT4Q9P109 453 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 MAGEC2Q9UBF1 373 aaPredicted RBP9.06□□□□□ -0.96
USP28-215ENST00000545608 CDV3Q9UKY7 258 aaKnown RBP9.06□□□□□ -0.96
USP28-215ENST00000545608 NME7Q9Y5B8 376 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 VPS13AQ96RL7 3174 aa9.06□□□□□ -0.96
USP28-215ENST00000545608 TRAV19A0A0A6YYK7 116 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 C2orf78A6NCI8 922 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 CLIC2O15247 247 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 EIF3DO15371 548 aaKnown RBP eCLIP9.05□□□□□ -0.96
USP28-215ENST00000545608 TNNC2P02585 160 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 USP17L7P0C7H9 530 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 WARSP23381 471 aaKnown RBP9.05□□□□□ -0.96
USP28-215ENST00000545608 BDNFP23560 247 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 CASP1P29466 404 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 GJA4P35212 333 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 MAGEA11P43364 429 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 ASIC1P78348 528 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 PDGFRLQ15198 375 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 ZNF77Q15935 545 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 FAM26FQ5R3K3 315 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 CNNM4Q6P4Q7 775 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 STXBP4Q6ZWJ1 553 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 CEP68Q76N32 757 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 TRAPPC11Q7Z392 1133 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 ARHGAP30Q7Z6I6 1101 aaPredicted RBP9.05□□□□□ -0.96
USP28-215ENST00000545608 WDR49Q8IV35 697 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 NELFCDQ8IXH7 590 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 FAM160A2Q8N612 972 aaPredicted RBP9.05□□□□□ -0.96
USP28-215ENST00000545608 ARL14EPQ8N8R7 260 aaPredicted RBP9.05□□□□□ -0.96
USP28-215ENST00000545608 TTC16Q8NEE8 873 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 PRR7Q8TB68 274 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 LRRN4Q8WUT4 740 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 OSCP1Q8WVF1 389 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 ZNF516Q92618 1163 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 EZH1Q92800 747 aaPredicted RBP9.05□□□□□ -0.96
USP28-215ENST00000545608 ZNF396Q96N95 335 aaPredicted RBP9.05□□□□□ -0.96
USP28-215ENST00000545608 C7orf25Q9BPX7 421 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 MRPL45Q9BRJ2 306 aaKnown RBP9.05□□□□□ -0.96
USP28-215ENST00000545608 RTKNQ9BST9 563 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 LINC00597Q9H2U6 94 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 CUEDC2Q9H467 287 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 ECT2Q9H8V3 914 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 KIAA1586Q9HCI6 787 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 AGPAT3Q9NRZ7 376 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 SEMA4GQ9NTN9 838 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 DUS2Q9NX74 493 aaKnown RBP9.05□□□□□ -0.96
USP28-215ENST00000545608 CDH9Q9ULB4 789 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 R3HCC1Q9Y3T6 440 aaKnown RBP9.05□□□□□ -0.96
USP28-215ENST00000545608 WNT6Q9Y6F9 365 aa9.05□□□□□ -0.96
USP28-215ENST00000545608 NUP210Q8TEM1 1887 aaPredicted RBP9.04□□□□□ -0.96
USP28-215ENST00000545608 NCOR2Q9Y618 2525 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 LOC105378220A0A1B0GUY1 285 aaPredicted RBP9.04□□□□□ -0.96
USP28-215ENST00000545608 BHMG1C9JSJ3 638 aaPredicted RBP9.04□□□□□ -0.96
USP28-215ENST00000545608 AXIN1O15169 862 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 GDF9O60383 454 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 CUTAO60888 179 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 LRP3O75074 770 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 ATG13O75143 517 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 YEATS4O95619 227 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 CKMP06732 381 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 DLATP10515 647 aaKnown RBP9.04□□□□□ -0.96
USP28-215ENST00000545608 HDCP19113 662 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 TNNI1P19237 187 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 GNL1P36915 607 aaPredicted RBP9.04□□□□□ -0.96
USP28-215ENST00000545608 GRIK1P39086 918 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 IFNAR2P48551 515 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 CYP2J2P51589 502 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 ZXDBP98169 803 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 AMPD3Q01432 767 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 AMPD2Q01433 879 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 CYP27A1Q02318 531 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 EHHADHQ08426 723 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 PDE4CQ08493 712 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 USP4Q13107 963 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 PSMD6Q15008 389 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 CSRP2Q16527 193 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 SNRNP35Q16560 246 aaKnown RBP9.04□□□□□ -0.96
USP28-215ENST00000545608 EML3Q32P44 896 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 FOXD4L6Q3SYB3 417 aaPredicted RBP9.04□□□□□ -0.96
USP28-215ENST00000545608 VSTM1Q6UX27 236 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 FOXD4L3Q6VB84 417 aaPredicted RBP9.04□□□□□ -0.96
USP28-215ENST00000545608 C4orf50Q6ZRC1 276 aa9.04□□□□□ -0.96
USP28-215ENST00000545608 PRR23CQ6ZRP0 262 aa9.04□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 28.3 ms