RNA–Protein interactions for RNA: ENST00000544989.1

HDAC4-216, Transcript of histone deacetylase 4, humanhuman

TSL 5

Gene HDAC4, Length 342 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-216ENST00000544989 YWHAEP62258 255 aaKnown RBP12.55□□□□□ -0.4
HDAC4-216ENST00000544989 AMPD2Q01433 879 aa12.55□□□□□ -0.4
HDAC4-216ENST00000544989 DCAF17Q5H9S7 520 aaPredicted RBP12.55□□□□□ -0.4
HDAC4-216ENST00000544989 STXBP5Q5T5C0 1151 aa12.55□□□□□ -0.4
HDAC4-216ENST00000544989 SDHAF4Q5VUM1 108 aa12.55□□□□□ -0.4
HDAC4-216ENST00000544989 CC2D1AQ6P1N0 951 aaPredicted RBP12.55□□□□□ -0.4
HDAC4-216ENST00000544989 TPRG1Q6ZUI0 275 aa12.55□□□□□ -0.4
HDAC4-216ENST00000544989 TMEM150AQ86TG1 271 aa12.55□□□□□ -0.4
HDAC4-216ENST00000544989 KIAA1958Q8N8K9 716 aa12.55□□□□□ -0.4
HDAC4-216ENST00000544989 MAB21L3Q8N8X9 362 aa12.55□□□□□ -0.4
HDAC4-216ENST00000544989 DTWD2Q8NBA8 298 aa12.55□□□□□ -0.4
HDAC4-216ENST00000544989 TAS1R2Q8TE23 839 aa12.55□□□□□ -0.4
HDAC4-216ENST00000544989 ERCC4Q92889 916 aaPredicted RBP12.55□□□□□ -0.4
HDAC4-216ENST00000544989 EXOC4Q96A65 974 aa12.55□□□□□ -0.4
HDAC4-216ENST00000544989 NT5C1AQ9BXI3 368 aa12.55□□□□□ -0.4
HDAC4-216ENST00000544989 B3GNT5Q9BYG0 378 aa12.55□□□□□ -0.4
HDAC4-216ENST00000544989 DPEP3Q9H4B8 488 aa12.55□□□□□ -0.4
HDAC4-216ENST00000544989 MMRN2Q9H8L6 949 aa12.55□□□□□ -0.4
HDAC4-216ENST00000544989 LTB4R2Q9NPC1 389 aa12.55□□□□□ -0.4
HDAC4-216ENST00000544989 DMAP1Q9NPF5 467 aaPredicted RBP12.55□□□□□ -0.4
HDAC4-216ENST00000544989 TDP1Q9NUW8 608 aa12.55□□□□□ -0.4
HDAC4-216ENST00000544989 RAB20Q9NX57 234 aa12.55□□□□□ -0.4
HDAC4-216ENST00000544989 NRG2O14511 850 aaPredicted RBP12.54□□□□□ -0.4
HDAC4-216ENST00000544989 RPS9P46781 194 aaKnown RBP12.54□□□□□ -0.4
HDAC4-216ENST00000544989 RAP1GAPP47736 663 aa12.54□□□□□ -0.4
HDAC4-216ENST00000544989 NDST1P52848 882 aa12.54□□□□□ -0.4
HDAC4-216ENST00000544989 PAK1Q13153 545 aa12.54□□□□□ -0.4
HDAC4-216ENST00000544989 UBXN2BQ14CS0 331 aa12.54□□□□□ -0.4
HDAC4-216ENST00000544989 CCDC40Q4G0X9 1142 aa12.54□□□□□ -0.4
HDAC4-216ENST00000544989 TXNDC8Q6A555 127 aa12.54□□□□□ -0.4
HDAC4-216ENST00000544989 CLEC17AQ6ZS10 378 aa12.54□□□□□ -0.4
HDAC4-216ENST00000544989 FAM35AQ86V20 835 aa12.54□□□□□ -0.4
HDAC4-216ENST00000544989 NUP93Q8N1F7 819 aa12.54□□□□□ -0.4
HDAC4-216ENST00000544989 STKLD1Q8NE28 680 aa12.54□□□□□ -0.4
HDAC4-216ENST00000544989 NELFBQ8WX92 580 aa12.54□□□□□ -0.4
HDAC4-216ENST00000544989 ZNF518BQ9C0D4 1074 aa12.54□□□□□ -0.4
HDAC4-216ENST00000544989 FBXO44Q9H4M3 255 aa12.54□□□□□ -0.4
HDAC4-216ENST00000544989 HEBP1Q9NRV9 189 aa12.54□□□□□ -0.4
HDAC4-216ENST00000544989 KIAA1468Q9P260 1216 aa12.54□□□□□ -0.4
HDAC4-216ENST00000544989 COQ4Q9Y3A0 265 aa12.54□□□□□ -0.4
HDAC4-216ENST00000544989 PIAS3Q9Y6X2 628 aa12.54□□□□□ -0.4
HDAC4-216ENST00000544989 NUP210Q8TEM1 1887 aaPredicted RBP12.54□□□□□ -0.4
HDAC4-216ENST00000544989 F5P12259 2224 aa12.54□□□□□ -0.4
HDAC4-216ENST00000544989 FAM170BA6NMN3 283 aa12.53□□□□□ -0.4
HDAC4-216ENST00000544989 PROB1E7EW31 1015 aa12.53□□□□□ -0.4
HDAC4-216ENST00000544989 ARNTLO00327 626 aa12.53□□□□□ -0.4
HDAC4-216ENST00000544989 P4HA2O15460 535 aa12.53□□□□□ -0.4
HDAC4-216ENST00000544989 PI15O43692 258 aa12.53□□□□□ -0.4
HDAC4-216ENST00000544989 AP1G2O75843 785 aa12.53□□□□□ -0.4
HDAC4-216ENST00000544989 PRAMEF12O95522 483 aa12.53□□□□□ -0.4
HDAC4-216ENST00000544989 CKMP06732 381 aa12.53□□□□□ -0.4
HDAC4-216ENST00000544989 FAM200BP0CF97 657 aa12.53□□□□□ -0.4
HDAC4-216ENST00000544989 TCF3P15923 654 aa12.53□□□□□ -0.4
HDAC4-216ENST00000544989 YWHAQP27348 245 aa12.53□□□□□ -0.4
HDAC4-216ENST00000544989 KPNA1P52294 538 aaPredicted RBP12.53□□□□□ -0.4
HDAC4-216ENST00000544989 PMS1P54277 932 aaKnown RBP12.53□□□□□ -0.4
HDAC4-216ENST00000544989 PDGFRLQ15198 375 aa12.53□□□□□ -0.4
HDAC4-216ENST00000544989 CCDC142Q17RM4 750 aa12.53□□□□□ -0.4
HDAC4-216ENST00000544989 SPOPLQ6IQ16 392 aa12.53□□□□□ -0.4
HDAC4-216ENST00000544989 KLHL10Q6JEL2 608 aa12.53□□□□□ -0.4
HDAC4-216ENST00000544989 TTI2Q6NXR4 508 aa12.53□□□□□ -0.4
HDAC4-216ENST00000544989 ACOT1Q86TX2 421 aa12.53□□□□□ -0.4
HDAC4-216ENST00000544989 RALGPS2Q86X27 583 aaPredicted RBP12.53□□□□□ -0.4
HDAC4-216ENST00000544989 DDX42Q86XP3 938 aaKnown RBP eCLIP12.53□□□□□ -0.4
HDAC4-216ENST00000544989 FAM3CQ92520 227 aa12.53□□□□□ -0.4
HDAC4-216ENST00000544989 ATOH1Q92858 354 aaPredicted RBP12.53□□□□□ -0.4
HDAC4-216ENST00000544989 EEF2KMTQ96G04 330 aa12.53□□□□□ -0.4
HDAC4-216ENST00000544989 HNRNPABQ99729 332 aaKnown RBP12.53□□□□□ -0.4
HDAC4-216ENST00000544989 SDCBP2Q9H190 292 aa12.53□□□□□ -0.4
HDAC4-216ENST00000544989 APOBEC3GQ9HC16 384 aaKnown RBP12.53□□□□□ -0.4
HDAC4-216ENST00000544989 TRPC7Q9HCX4 862 aa12.53□□□□□ -0.4
HDAC4-216ENST00000544989 PNPLA8Q9NP80 782 aa12.53□□□□□ -0.4
HDAC4-216ENST00000544989 KRT82Q9NSB4 513 aa12.53□□□□□ -0.4
HDAC4-216ENST00000544989 NME7Q9Y5B8 376 aa12.53□□□□□ -0.4
HDAC4-216ENST00000544989 NCANO14594 1321 aa12.53□□□□□ -0.4
HDAC4-216ENST00000544989 PTPRDP23468 1912 aa12.52□□□□□ -0.4
HDAC4-216ENST00000544989 TPRP12270 2363 aaKnown RBP12.52□□□□□ -0.4
HDAC4-216ENST00000544989 EP300Q09472 2414 aaPredicted RBP12.52□□□□□ -0.4
HDAC4-216ENST00000544989 TRIM49BA6NDI0 452 aa12.52□□□□□ -0.41
HDAC4-216ENST00000544989 PPP1R3GB7ZBB8 358 aa12.52□□□□□ -0.41
HDAC4-216ENST00000544989 CILPO75339 1184 aa12.52□□□□□ -0.41
HDAC4-216ENST00000544989 TADA3O75528 432 aa12.52□□□□□ -0.41
HDAC4-216ENST00000544989 CCDC192P0DO97 292 aa12.52□□□□□ -0.41
HDAC4-216ENST00000544989 HDCP19113 662 aa12.52□□□□□ -0.41
HDAC4-216ENST00000544989 TBXAS1P24557 533 aaPredicted RBP12.52□□□□□ -0.41
HDAC4-216ENST00000544989 TUBP50607 506 aa12.52□□□□□ -0.41
HDAC4-216ENST00000544989 SLC8A3P57103 927 aa12.52□□□□□ -0.41
HDAC4-216ENST00000544989 LRRC32Q14392 662 aa12.52□□□□□ -0.41
HDAC4-216ENST00000544989 PPP2R5DQ14738 602 aa12.52□□□□□ -0.41
HDAC4-216ENST00000544989 ITPRIPL2Q3MIP1 535 aa12.52□□□□□ -0.41
HDAC4-216ENST00000544989 ISM2Q6H9L7 571 aa12.52□□□□□ -0.41
HDAC4-216ENST00000544989 C1orf210Q8IVY1 113 aa12.52□□□□□ -0.41
HDAC4-216ENST00000544989 FUKQ8N0W3 1084 aa12.52□□□□□ -0.41
HDAC4-216ENST00000544989 SLC2A14Q8TDB8 520 aa12.52□□□□□ -0.41
HDAC4-216ENST00000544989 USP13Q92995 863 aaPredicted RBP12.52□□□□□ -0.41
HDAC4-216ENST00000544989 FBXO32Q969P5 355 aa12.52□□□□□ -0.41
HDAC4-216ENST00000544989 SLC35C1Q96A29 364 aa12.52□□□□□ -0.41
HDAC4-216ENST00000544989 CLDN23Q96B33 292 aa12.52□□□□□ -0.41
HDAC4-216ENST00000544989 RSPRY1Q96DX4 576 aa12.52□□□□□ -0.41
HDAC4-216ENST00000544989 GBP4Q96PP9 640 aa12.52□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms