RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 PPP2R2CQ9Y2T4 447 aa10.07□□□□□ -0.8
YBX3-215ENST00000544504 PCDHA13Q9Y5I0 950 aa10.07□□□□□ -0.8
YBX3-215ENST00000544504 GVINP1Q7Z2Y8 2422 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 EPG5Q9HCE0 2579 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 CFAP47Q6ZTR5 3102 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 ANKRD62A6NC57 917 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 I3L4J1 428 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 PJA2O43164 708 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 GLP2RO95838 553 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 SOD2P04179 222 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 CYP1A1P04798 512 aaPredicted RBP10.06□□□□□ -0.8
YBX3-215ENST00000544504 ITGB1P05556 798 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 CALB1P05937 261 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 URODP06132 367 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 CHRNB2P17787 502 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 DNAJB1P25685 340 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 TKTP29401 623 aaKnown RBP10.06□□□□□ -0.8
YBX3-215ENST00000544504 PLCB3Q01970 1234 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 CENPCQ03188 943 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 CTXN3Q4LDR2 81 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 VARS2Q5ST30 1063 aaKnown RBP10.06□□□□□ -0.8
YBX3-215ENST00000544504 LIN9Q5TKA1 542 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 ACAD10Q6JQN1 1059 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 TOGARAM2Q6ZUX3 1019 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 ADGRD2Q7Z7M1 963 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 OSTM1Q86WC4 334 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 PHF13Q86YI8 300 aaPredicted RBP10.06□□□□□ -0.8
YBX3-215ENST00000544504 GPIHBP1Q8IV16 184 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 UBALD2Q8IYN6 164 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 CCAR2Q8N163 923 aaKnown RBP10.06□□□□□ -0.8
YBX3-215ENST00000544504 TMEM105Q8N8V8 129 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 ANKRD52Q8NB46 1076 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 LNX1Q8TBB1 728 aaPredicted RBP10.06□□□□□ -0.8
YBX3-215ENST00000544504 MYCBPAPQ8TBZ2 947 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 IPO4Q8TEX9 1081 aaKnown RBP10.06□□□□□ -0.8
YBX3-215ENST00000544504 STK32AQ8WU08 396 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 C2orf15Q8WU43 125 aaKnown RBP10.06□□□□□ -0.8
YBX3-215ENST00000544504 UBE2Q2Q8WVN8 375 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 PIK3R5Q8WYR1 880 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 TFAP2BQ92481 460 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 SUSD6Q92537 303 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 FUBP3Q96I24 572 aaKnown RBP eCLIP10.06□□□□□ -0.8
YBX3-215ENST00000544504 TWNKQ96RR1 684 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 HNRNPABQ99729 332 aaKnown RBP10.06□□□□□ -0.8
YBX3-215ENST00000544504 MED10Q9BTT4 135 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 CYLDQ9NQC7 956 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 APOBEC3CQ9NRW3 190 aaKnown RBP eCLIP10.06□□□□□ -0.8
YBX3-215ENST00000544504 HMGXB4Q9UGU5 601 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 STRIP2Q9ULQ0 834 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 NENFQ9UMX5 172 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 LZTS1Q9Y250 596 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 TIMM13Q9Y5L4 95 aaPredicted RBP10.06□□□□□ -0.8
YBX3-215ENST00000544504 BACE2Q9Y5Z0 518 aa10.06□□□□□ -0.8
YBX3-215ENST00000544504 KMT2BQ9UMN6 2715 aaPredicted RBP10.06□□□□□ -0.8
YBX3-215ENST00000544504 NLRC5Q86WI3 1866 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 A0A0A6YYK5 440 aaPredicted RBP10.05□□□□□ -0.8
YBX3-215ENST00000544504 MED19A0JLT2 244 aaPredicted RBP10.05□□□□□ -0.8
YBX3-215ENST00000544504 BTNL10A8MVZ5 291 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 ESPNB1AK53 854 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 NT5C1B-RDH14C9J2C7 533 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 M0QYV0 167 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 KIF2AO00139 706 aaPredicted RBP10.05□□□□□ -0.8
YBX3-215ENST00000544504 MICAL2O94851 1124 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 EFEMP2O95967 443 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 FTLP02792 175 aaPredicted RBP10.05□□□□□ -0.8
YBX3-215ENST00000544504 TMEM253P0C7T8 217 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 UNGP13051 313 aaPredicted RBP10.05□□□□□ -0.8
YBX3-215ENST00000544504 LMO2P25791 158 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 ACADSBP45954 432 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 GLUD2P49448 558 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 NOMO3P69849 1222 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 CYP27A1Q02318 531 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 UBE3AQ05086 875 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 C1QBPQ07021 282 aaKnown RBP10.05□□□□□ -0.8
YBX3-215ENST00000544504 BST2Q10589 180 aaKnown RBP10.05□□□□□ -0.8
YBX3-215ENST00000544504 MTMR3Q13615 1198 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 MRPL58Q14197 206 aaKnown RBP10.05□□□□□ -0.8
YBX3-215ENST00000544504 GOLGA7BQ2TAP0 167 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 MDH1BQ5I0G3 518 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 PPP1R26Q5T8A7 1209 aaPredicted RBP10.05□□□□□ -0.8
YBX3-215ENST00000544504 FAM171BQ6P995 826 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 DGLUCYQ7Z3D6 616 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 RBM23Q86U06 439 aaKnown RBP10.05□□□□□ -0.8
YBX3-215ENST00000544504 CEP57Q86XR8 500 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 RHOT2Q8IXI1 618 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 RNF168Q8IYW5 571 aaPredicted RBP10.05□□□□□ -0.8
YBX3-215ENST00000544504 ACRBPQ8NEB7 543 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 SPPL3Q8TCT6 385 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 SMARCD1Q96GM5 515 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 DESI2Q9BSY9 194 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 GPR62Q9BZJ7 368 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 SYNCQ9H7C4 482 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 ABCB6Q9NP58 842 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 ACP6Q9NPH0 428 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 CHST7Q9NS84 486 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 WDR35Q9P2L0 1181 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 MYO1AQ9UBC5 1043 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 LCMT1Q9UIC8 334 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 TSPAN16Q9UKR8 245 aa10.05□□□□□ -0.8
YBX3-215ENST00000544504 MAFFQ9ULX9 164 aa10.05□□□□□ -0.8
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms