RNA–Protein interactions for RNA: ENST00000544349.5

VPS33A-209, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 2

Gene VPS33A, Length 2,114 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-209ENST00000544349 PPP2R5EQ16537 467 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 PKDCCQ504Y2 493 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 ARHGAP17Q68EM7 881 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 DCUN1D2Q6PH85 259 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 XYLT1Q86Y38 959 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 RNF169Q8NCN4 708 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 HERPUD2Q9BSE4 406 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 SEZ6LQ9BYH1 1024 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 EPN3Q9H201 632 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 PAK6Q9NQU5 681 aaPredicted RBP15.07■□□□□ 0
VPS33A-209ENST00000544349 FAM49BQ9NUQ9 324 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 CACNG4Q9UBN1 327 aa15.07■□□□□ 0
VPS33A-209ENST00000544349 NOVA2Q9UNW9 492 aaKnown RBP15.07■□□□□ 0
VPS33A-209ENST00000544349 DNAH12Q6ZR08 3092 aa15.06■□□□□ 0
VPS33A-209ENST00000544349 EBAG9O00559 213 aa15.06■□□□□ 0
VPS33A-209ENST00000544349 CYB561D2O14569 222 aa15.06■□□□□ 0
VPS33A-209ENST00000544349 PDGFRBP09619 1106 aa15.06■□□□□ 0
VPS33A-209ENST00000544349 FAM163BP0C2L3 166 aa15.06■□□□□ 0
VPS33A-209ENST00000544349 WARSP23381 471 aaKnown RBP15.06■□□□□ 0
VPS33A-209ENST00000544349 IGFBP6P24592 240 aaPredicted RBP15.06■□□□□ 0
VPS33A-209ENST00000544349 CLCNKBP51801 687 aa15.06■□□□□ 0
VPS33A-209ENST00000544349 AGBL2Q5U5Z8 902 aa15.06■□□□□ 0
VPS33A-209ENST00000544349 TTC30AQ86WT1 665 aa15.06■□□□□ 0
VPS33A-209ENST00000544349 ECHDC2Q86YB7 292 aa15.06■□□□□ 0
VPS33A-209ENST00000544349 ADGRF2Q8IZF7 708 aa15.06■□□□□ 0
VPS33A-209ENST00000544349 RNF25Q96BH1 459 aaPredicted RBP15.06■□□□□ 0
VPS33A-209ENST00000544349 SYNCQ9H7C4 482 aa15.06■□□□□ 0
VPS33A-209ENST00000544349 UBN1Q9NPG3 1134 aa15.06■□□□□ 0
VPS33A-209ENST00000544349 RGS18Q9NS28 235 aa15.06■□□□□ 0
VPS33A-209ENST00000544349 RASAL2Q9UJF2 1139 aa15.06■□□□□ 0
VPS33A-209ENST00000544349 GOLGA8SH3BPF8 625 aa15.05■□□□□ 0
VPS33A-209ENST00000544349 PODXLO00592 558 aa15.05■□□□□ 0
VPS33A-209ENST00000544349 KRT3P12035 628 aa15.05■□□□□ 0
VPS33A-209ENST00000544349 COILP38432 576 aaPredicted RBP15.05■□□□□ 0
VPS33A-209ENST00000544349 MAGOHP61326 146 aaKnown RBP15.05■□□□□ 0
VPS33A-209ENST00000544349 OGDHQ02218 1023 aa15.05■□□□□ 0
VPS33A-209ENST00000544349 ZNF252P-AS1Q0IIN9 211 aa15.05■□□□□ 0
VPS33A-209ENST00000544349 MTFR1Q15390 333 aa15.05■□□□□ 0
VPS33A-209ENST00000544349 CYP1B1Q16678 543 aa15.05■□□□□ 0
VPS33A-209ENST00000544349 ZNF598Q86UK7 904 aaKnown RBP15.05■□□□□ 0
VPS33A-209ENST00000544349 RTN4RL1Q86UN2 441 aaPredicted RBP15.05■□□□□ 0
VPS33A-209ENST00000544349 NLRP14Q86W24 1093 aa15.05■□□□□ 0
VPS33A-209ENST00000544349 OSTM1Q86WC4 334 aa15.05■□□□□ 0
VPS33A-209ENST00000544349 MYCBPAPQ8TBZ2 947 aa15.05■□□□□ 0
VPS33A-209ENST00000544349 ZNF473Q8WTR7 871 aaKnown RBP15.05■□□□□ 0
VPS33A-209ENST00000544349 LPIN3Q9BQK8 851 aa15.05■□□□□ 0
VPS33A-209ENST00000544349 USTQ9Y2C2 406 aa15.05■□□□□ 0
VPS33A-209ENST00000544349 TDRD15B5MCY1 1934 aaKnown RBP15.05■□□□□ 0
VPS33A-209ENST00000544349 MYCP01106 439 aaPredicted RBP15.05■□□□□ -0
VPS33A-209ENST00000544349 IBSPP21815 317 aaPredicted RBP15.05■□□□□ -0
VPS33A-209ENST00000544349 RPL9P32969 192 aaKnown RBP15.05■□□□□ -0
VPS33A-209ENST00000544349 PMS2P54278 862 aa15.05■□□□□ -0
VPS33A-209ENST00000544349 TAS2R40P59535 323 aa15.05■□□□□ -0
VPS33A-209ENST00000544349 PIGHQ14442 188 aaPredicted RBP15.05■□□□□ -0
VPS33A-209ENST00000544349 RHOT1Q8IXI2 618 aa15.05■□□□□ -0
VPS33A-209ENST00000544349 IPO4Q8TEX9 1081 aaKnown RBP15.05■□□□□ -0
VPS33A-209ENST00000544349 MCRS1Q96EZ8 462 aa15.05■□□□□ -0
VPS33A-209ENST00000544349 DDX27Q96GQ7 796 aaKnown RBP15.05■□□□□ -0
VPS33A-209ENST00000544349 DEFB118Q96PH6 123 aa15.05■□□□□ -0
VPS33A-209ENST00000544349 DNAI2Q9GZS0 605 aa15.05■□□□□ -0
VPS33A-209ENST00000544349 HESX1Q9UBX0 185 aa15.05■□□□□ -0
VPS33A-209ENST00000544349 SBDSQ9Y3A5 250 aaKnown RBP eCLIP15.05■□□□□ -0
VPS33A-209ENST00000544349 CASTOR2A6NHX0 329 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 PSTPIP1O43586 416 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 POMCP01189 267 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 SETSIPP0DME0 302 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 RFC1P35251 1148 aaPredicted RBP15.04■□□□□ -0
VPS33A-209ENST00000544349 PPP2R2AP63151 447 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 UPP1Q16831 310 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 WSCD1Q658N2 575 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 FAM126BQ8IXS8 530 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 NIPA2Q8N8Q9 360 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 C3orf58Q8NDZ4 430 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 SLC35F5Q8WV83 523 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 TLCD1Q96CP7 247 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 SENP8Q96LD8 212 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 PLVAPQ9BX97 442 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 FAM107BQ9H098 131 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 PPANQ9NQ55 473 aaKnown RBP15.04■□□□□ -0
VPS33A-209ENST00000544349 CEP350Q5VT06 3117 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 A6NNZ2 444 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 C9IYK1 514 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 GABRDO14764 452 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 NUDT17P0C025 328 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 MAGEA9P43362 315 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 DRG2P55039 364 aaKnown RBP15.04■□□□□ -0
VPS33A-209ENST00000544349 IFFO1Q0D2I5 559 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 GRIK3Q13003 919 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 TUBB8Q3ZCM7 444 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 PMF1Q6P1K2 205 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 LRRC8DQ7L1W4 858 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 C12orf50Q8NA57 414 aaPredicted RBP15.04■□□□□ -0
VPS33A-209ENST00000544349 JOSD2Q8TAC2 188 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 UHMK1Q8TAS1 419 aaKnown RBP15.04■□□□□ -0
VPS33A-209ENST00000544349 FNIP1Q8TF40 1166 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 C1orf54Q8WWF1 131 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 ATG4AQ8WYN0 398 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 TNIP3Q96KP6 325 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 CCT8L2Q96SF2 557 aa15.04■□□□□ -0
VPS33A-209ENST00000544349 PAAF1Q9BRP4 392 aa15.04■□□□□ -0
Retrieved 100 of 20,778 RNA–protein pairs in 26.4 ms