RNA–Protein interactions for RNA: ENST00000541488.1

PRKDC-210, Transcript of protein kinase, DNA-activated, catalytic subunit, human

TSL 3

Gene PRKDC, Length 719 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRKDC-210	ENST00000541488	MGAT5B	Q3V5L5	792 aa		4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	SLC9A4	Q6AI14	798 aa		4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	FCRL6	Q6DN72	434 aa		4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	OVCH2	Q7RTZ1	564 aa		4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	CAND1	Q86VP6	1230 aa	Known RBP	4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	CNGA4	Q8IV77	575 aa		4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	OR6B3	Q8NGW1	331 aa		4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	BPIFB1	Q8TDL5	484 aa		4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	ANKS1A	Q92625	1134 aa		4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	PPP2R3C	Q969Q6	453 aa		4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	C5orf34	Q96MH7	638 aa		4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	AIFM3	Q96NN9	605 aa		4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	LENG8	Q96PV6	779 aa	Predicted RBP	4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	PUS7	Q96PZ0	661 aa	Known RBP	4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	MESP1	Q9BRJ9	268 aa		4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	FSD1L	Q9BXM9	530 aa		4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	GBA2	Q9HCG7	927 aa	Predicted RBP	4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	PDGFC	Q9NRA1	345 aa		4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488	LPAR3	Q9UBY5	353 aa		4.86	□□□□□ -1.63
PRKDC-210	ENST00000541488		A0A087WWL8	130 aa		4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	E2F8	A0AVK6	867 aa		4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	PRRT4	C9JH25	899 aa		4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	TP73	O15350	636 aa		4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	TH	P07101	528 aa		4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	KCNA3	P22001	575 aa		4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	DGKE	P52429	567 aa		4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	HOXA4	Q00056	320 aa	Predicted RBP	4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	E2F1	Q01094	437 aa		4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	SLC44A4	Q53GD3	710 aa		4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	ODR4	Q5SWX8	454 aa		4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	DCAF12L1	Q5VU92	463 aa		4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	KIAA1614	Q5VZ46	1190 aa		4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	SLC18B1	Q6NT16	456 aa		4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	SWSAP1	Q6NVH7	229 aa		4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	ZDHHC24	Q6UX98	284 aa		4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	SERPINA13P	Q6UXR4	307 aa		4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	TRIM72	Q6ZMU5	477 aa		4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	IZUMO1	Q8IYV9	350 aa		4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	ABRA	Q8N0Z2	381 aa		4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	ABHD11	Q8NFV4	315 aa		4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	DAZAP1	Q96EP5	407 aa	Known RBP	4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	ATP6V0A4	Q9HBG4	840 aa		4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	NRIP3	Q9NQ35	241 aa		4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	SACM1L	Q9NTJ5	587 aa		4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	SH2B3	Q9UQQ2	575 aa		4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	THRAP3	Q9Y2W1	955 aa	Known RBP	4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	USP19	O94966	1318 aa		4.85	□□□□□ -1.63
PRKDC-210	ENST00000541488	SETD1B	Q9UPS6	1966 aa	Known RBP	4.84	□□□□□ -1.63
PRKDC-210	ENST00000541488	KCNU1	A8MYU2	1149 aa		4.84	□□□□□ -1.63
PRKDC-210	ENST00000541488	PPP6C	O00743	305 aa		4.84	□□□□□ -1.63
PRKDC-210	ENST00000541488	PHGDH	O43175	533 aa	Known RBP	4.84	□□□□□ -1.63
PRKDC-210	ENST00000541488	LATS1	O95835	1130 aa		4.84	□□□□□ -1.63
PRKDC-210	ENST00000541488	CYP2C9	P11712	490 aa		4.84	□□□□□ -1.63
PRKDC-210	ENST00000541488	MLC1	Q15049	377 aa		4.84	□□□□□ -1.63
PRKDC-210	ENST00000541488	CYP1B1	Q16678	543 aa		4.84	□□□□□ -1.63
PRKDC-210	ENST00000541488	ANO6	Q4KMQ2	910 aa		4.84	□□□□□ -1.63
PRKDC-210	ENST00000541488	CACHD1	Q5VU97	1274 aa		4.84	□□□□□ -1.63
PRKDC-210	ENST00000541488	KIRREL2	Q6UWL6	708 aa		4.84	□□□□□ -1.63
PRKDC-210	ENST00000541488	KCTD20	Q7Z5Y7	419 aa		4.84	□□□□□ -1.63
PRKDC-210	ENST00000541488	IL31RA	Q8NI17	732 aa		4.84	□□□□□ -1.63
PRKDC-210	ENST00000541488	RP9	Q8TA86	221 aa	Known RBP	4.84	□□□□□ -1.63
PRKDC-210	ENST00000541488	SOCS4	Q8WXH5	440 aa		4.84	□□□□□ -1.63
PRKDC-210	ENST00000541488	WASF1	Q92558	559 aa		4.84	□□□□□ -1.63
PRKDC-210	ENST00000541488	MAML1	Q92585	1016 aa		4.84	□□□□□ -1.63
PRKDC-210	ENST00000541488	PRR25	Q96S07	402 aa		4.84	□□□□□ -1.63
PRKDC-210	ENST00000541488	C17orf80	Q9BSJ5	609 aa		4.84	□□□□□ -1.63
PRKDC-210	ENST00000541488	CIPC	Q9C0C6	399 aa		4.84	□□□□□ -1.63
PRKDC-210	ENST00000541488	TRMT13	Q9NUP7	481 aa	Known RBP	4.84	□□□□□ -1.63
PRKDC-210	ENST00000541488	ZSCAN32	Q9NX65	697 aa		4.84	□□□□□ -1.63
PRKDC-210	ENST00000541488	CPNE7	Q9UBL6	633 aa		4.84	□□□□□ -1.63
PRKDC-210	ENST00000541488	ZNF804B	A4D1E1	1349 aa		4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	CFAP69	A5D8W1	941 aa		4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	CES2	O00748	559 aa		4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	TBX3	O15119	743 aa		4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	TUSC2	O75896	110 aa		4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	RASAL1	O95294	804 aa		4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	XRCC6	P12956	609 aa	Known RBP eCLIP	4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	ARFIP2	P53365	341 aa		4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	EPHB1	P54762	984 aa		4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	SUMO3	P55854	103 aa	Predicted RBP	4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	RAB32	Q13637	225 aa		4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	GTF2H3	Q13889	308 aa		4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	ZNF425	Q6IV72	752 aa		4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	MAEA	Q7L5Y9	396 aa		4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	NEK8	Q86SG6	692 aa		4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	ZNF366	Q8N895	744 aa		4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	TERB1	Q8NA31	727 aa		4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	OR56A3	Q8NH54	315 aa		4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	DNAJB14	Q8TBM8	379 aa		4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	KBTBD7	Q8WVZ9	684 aa		4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	RITA1	Q96K30	269 aa		4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	ASB2	Q96Q27	587 aa		4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	C1QTNF7	Q9BXJ2	289 aa		4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	STK31	Q9BXU1	1019 aa		4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	SMURF2	Q9HAU4	748 aa		4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	KLHL13	Q9P2N7	655 aa		4.83	□□□□□ -1.64
PRKDC-210	ENST00000541488	FNDC1	Q4ZHG4	1894 aa	Predicted RBP	4.82	□□□□□ -1.64
PRKDC-210	ENST00000541488	CAPN8	A6NHC0	703 aa		4.82	□□□□□ -1.64
PRKDC-210	ENST00000541488		H7C4K7	107 aa		4.82	□□□□□ -1.64
PRKDC-210	ENST00000541488	RGS10	O43665	173 aa		4.82	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms