RNA–Protein interactions for RNA: ENST00000541204.5

RNF4-222, Transcript of ring finger protein 4, human

TSL 1 (best) BASIC

Gene RNF4, Length 2,796 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF4-222	ENST00000541204	WDTC1	Q8N5D0	677 aa		13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	NLRP7	Q8WX94	980 aa		13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	LRMDA	Q9H2I8	198 aa		13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	HMGXB4	Q9UGU5	601 aa		13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	SMG5	Q9UPR3	1016 aa	Known RBP	13.13	□□□□□ -0.31
RNF4-222	ENST00000541204	TMEM191C	A6NGB0	347 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	SGK1	O00141	431 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	PIK3R2	O00459	728 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	GAS2	O43903	313 aa	Known RBP	13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	OGDH	Q02218	1023 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	GAD2	Q05329	585 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	MORF4L2	Q15014	288 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	RNASEH2B	Q5TBB1	312 aa	Known RBP	13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	JADE1	Q6IE81	842 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	TAPT1	Q6NXT6	567 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	KCNN1	Q92952	543 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	SMYD3	Q9H7B4	428 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	C10orf88	Q9H8K7	445 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	SAE1	Q9UBE0	346 aa	Predicted RBP	13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	ALOX15B	O15296	676 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	TYROBP	O43914	113 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	CBX6	O95503	412 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	T-ENOL	P0DO92	83 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	KRT4	P19013	534 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	PROZ	P22891	400 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	AP3M2	P53677	418 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	MTM1	Q13496	603 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	EFTUD2	Q15029	972 aa	Known RBP eCLIP	13.12	□□□□□ -0.31	8e-8	■■■□□ 18.1
RNF4-222	ENST00000541204	CCDC142	Q17RM4	750 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	HHAT	Q5VTY9	493 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	DRICH1	Q6PGQ1	229 aa	Predicted RBP	13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	LVRN	Q6Q4G3	990 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	RGS9BP	Q6ZS82	235 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	UBR7	Q8N806	425 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	C1orf127	Q8N9H9	656 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	TMEM35B	Q8NCS4	154 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	C10orf82	Q8WW14	230 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	SIX4	Q9UIU6	781 aa		13.12	□□□□□ -0.31
RNF4-222	ENST00000541204	CCL15-CCL14	A0A0B4J2E2	113 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	LRRD1	A4D1F6	860 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	BTBD19	C9JJ37	291 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	DCTN3	O75935	186 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	ATP5H	O75947	161 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	VCP	P55072	806 aa	Known RBP	13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	GPX6	P59796	221 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	OASL	Q15646	514 aa	Known RBP	13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	CCL15	Q16663	113 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	PARP6	Q2NL67	630 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	CENPU	Q71F23	418 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	OTOA	Q7RTW8	1153 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	DPP9	Q86TI2	863 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	TAB3	Q8N5C8	712 aa	Predicted RBP	13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	SLC7A6OS	Q96CW6	309 aa	Predicted RBP	13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	hCG_1818297	A0A087WSY0	165 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	WDR91	A4D1P6	747 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	WFS1	O76024	890 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	ALDH3A1	P30838	453 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	PHKA2	P46019	1235 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	SLC26A2	P50443	739 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	SLC18A1	P54219	525 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	DYNLT1	P63172	113 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	SMTNL2	Q2TAL5	461 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	ZNF667	Q5HYK9	610 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	EXOC8	Q8IYI6	725 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	FAM13C	Q8NE31	585 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	ZC3H15	Q8WU90	426 aa	Known RBP	13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	ZNF75CP	Q92670	426 aa	Predicted RBP	13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	TWNK	Q96RR1	684 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	TBC1D10A	Q9BXI6	508 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	SDCBP2	Q9H190	292 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	SYNC	Q9H7C4	482 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	NPHS2	Q9NP85	383 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	BATF3	Q9NR55	127 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	SENP1	Q9P0U3	644 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	PSMC3IP	Q9P2W1	217 aa	Predicted RBP	13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	EVPL	Q92817	2033 aa		13.11	□□□□□ -0.31
RNF4-222	ENST00000541204	GM2A	P17900	193 aa		13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	ARF4	P18085	180 aa	Predicted RBP	13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	EPHB2	P29323	1055 aa		13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	SSTR1	P30872	391 aa		13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	LAMC2	Q13753	1193 aa		13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	TAF1B	Q53T94	588 aa	Predicted RBP	13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	TFDP3	Q5H9I0	405 aa		13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	KCNT1	Q5JUK3	1230 aa		13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	LDLRAD1	Q5T700	205 aa		13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	LONP2	Q86WA8	852 aa		13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	AGGF1	Q8N302	714 aa	eCLIP	13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	EMC1	Q8N766	993 aa		13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	FAXDC2	Q96IV6	333 aa		13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	C12orf65	Q9H3J6	166 aa	Known RBP	13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	CDKN2AIP	Q9NXV6	580 aa	Predicted RBP	13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	CYTH4	Q9UIA0	394 aa		13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	TNFSF13B	Q9Y275	285 aa		13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	DRG1	Q9Y295	367 aa	Known RBP	13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	B4GALT4	O60513	344 aa		13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	NEBL	O76041	1014 aa		13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	GRM1	Q13255	1194 aa		13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	SURF1	Q15526	300 aa		13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	ZNF792	Q3KQV3	632 aa		13.1	□□□□□ -0.31
RNF4-222	ENST00000541204	MAMDC4	Q6UXC1	1216 aa		13.1	□□□□□ -0.31

Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms