RNA–Protein interactions for RNA: ENST00000540438.5

USP28-208, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 2

Gene USP28, Length 3,015 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-208ENST00000540438 DYNC1LI2O43237 492 aaPredicted RBP17.72■□□□□ 0.43
USP28-208ENST00000540438 RNF8O76064 485 aa17.72■□□□□ 0.43
USP28-208ENST00000540438 CCDC130P13994 396 aa17.72■□□□□ 0.43
USP28-208ENST00000540438 RNASELQ05823 741 aaKnown RBP17.72■□□□□ 0.43
USP28-208ENST00000540438 MOGSQ13724 837 aa17.72■□□□□ 0.43
USP28-208ENST00000540438 HIF1AQ16665 826 aa17.72■□□□□ 0.43
USP28-208ENST00000540438 GOLGA7BQ2TAP0 167 aa17.72■□□□□ 0.43
USP28-208ENST00000540438 TRPM8Q7Z2W7 1104 aa17.72■□□□□ 0.43
USP28-208ENST00000540438 ZCCHC9Q8N567 271 aaKnown RBP17.72■□□□□ 0.43
USP28-208ENST00000540438 FBF1Q8TES7 1133 aa17.72■□□□□ 0.43
USP28-208ENST00000540438 VCPIP1Q96JH7 1222 aa17.72■□□□□ 0.43
USP28-208ENST00000540438 XPO7Q9UIA9 1087 aaKnown RBP17.72■□□□□ 0.43
USP28-208ENST00000540438 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.72■□□□□ 0.43
USP28-208ENST00000540438 SCN1AP35498 2009 aa17.72■□□□□ 0.43
USP28-208ENST00000540438 IGKV6-21A0A0C4DH24 114 aa17.72■□□□□ 0.43
USP28-208ENST00000540438 SNX3O60493 162 aa17.72■□□□□ 0.43
USP28-208ENST00000540438 PIGHQ14442 188 aaPredicted RBP17.72■□□□□ 0.43
USP28-208ENST00000540438 RNASEH2BQ5TBB1 312 aaKnown RBP17.72■□□□□ 0.43
USP28-208ENST00000540438 RNF39Q9H2S5 420 aa17.72■□□□□ 0.43
USP28-208ENST00000540438 NXF3Q9H4D5 531 aaKnown RBP17.72■□□□□ 0.43
USP28-208ENST00000540438 CDH16O75309 829 aa17.72■□□□□ 0.43
USP28-208ENST00000540438 EIF4BP23588 611 aaKnown RBP17.72■□□□□ 0.43
USP28-208ENST00000540438 LMO2P25791 158 aa17.72■□□□□ 0.43
USP28-208ENST00000540438 GPD2P43304 727 aa17.72■□□□□ 0.43
USP28-208ENST00000540438 YWHAGP61981 247 aaKnown RBP eCLIP17.72■□□□□ 0.43
USP28-208ENST00000540438 IRX4P78413 519 aa17.72■□□□□ 0.43
USP28-208ENST00000540438 MGAT5Q09328 741 aa17.72■□□□□ 0.43
USP28-208ENST00000540438 CTAGE3PQ8IX95 158 aa17.72■□□□□ 0.43
USP28-208ENST00000540438 TMEM237Q96Q45 408 aa17.72■□□□□ 0.43
USP28-208ENST00000540438 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP17.72■□□□□ 0.43
USP28-208ENST00000540438 IL1RAPL1Q9NZN1 696 aa17.72■□□□□ 0.43
USP28-208ENST00000540438 CLUHO75153 1309 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 SPDYE5A6NIY4 337 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 PDHXO00330 501 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 FSBPO95073 299 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 HMGCRP04035 888 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 PROZP22891 400 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 ACAT1P24752 427 aaKnown RBP17.71■□□□□ 0.43
USP28-208ENST00000540438 GBP1P32455 592 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 PALM2Q8IXS6 379 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 FITM2Q8N6M3 262 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 SLCO2A1Q92959 643 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 CCDC77Q9BR77 488 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 PITPNM3Q9BZ71 974 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 L3MBTL1Q9Y468 752 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 C5orf60A6NFR6 353 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 SIGLEC16A6NMB1 481 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 CILPO75339 1184 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 GMPRP36959 345 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 CRADDP78560 199 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 TAPT1Q6NXT6 567 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 ZNF449Q6P9G9 518 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 PIGWQ7Z7B1 504 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 KIRREL3Q8IZU9 778 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 FUKQ8N0W3 1084 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 PYROXD2Q8N2H3 581 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 CCDC110Q8TBZ0 833 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 SLC17A6Q9P2U8 582 aa17.71■□□□□ 0.43
USP28-208ENST00000540438 B4GALT4O60513 344 aa17.7■□□□□ 0.42
USP28-208ENST00000540438 TOP3BO95985 862 aaKnown RBP17.7■□□□□ 0.42
USP28-208ENST00000540438 ADRA1DP25100 572 aa17.7■□□□□ 0.42
USP28-208ENST00000540438 GRIA1P42261 906 aa17.7■□□□□ 0.42
USP28-208ENST00000540438 KRT81Q14533 505 aa17.7■□□□□ 0.42
USP28-208ENST00000540438 CYB5D1Q6P9G0 228 aa17.7■□□□□ 0.42
USP28-208ENST00000540438 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.7■□□□□ 0.42
USP28-208ENST00000540438 ACAP3Q96P50 834 aa17.7■□□□□ 0.42
USP28-208ENST00000540438 C2orf40Q9H1Z8 148 aa17.7■□□□□ 0.42
USP28-208ENST00000540438 SLC17A7Q9P2U7 560 aa17.7■□□□□ 0.42
USP28-208ENST00000540438 LTBP3Q9NS15 1303 aa17.7■□□□□ 0.42
USP28-208ENST00000540438 DNAJC25-GNG10A0A024R161 153 aa17.7■□□□□ 0.42
USP28-208ENST00000540438 KCNN4O15554 427 aa17.7■□□□□ 0.42
USP28-208ENST00000540438 EPHX2P34913 555 aa17.7■□□□□ 0.42
USP28-208ENST00000540438 BEX3Q00994 111 aa17.7■□□□□ 0.42
USP28-208ENST00000540438 MFSD5Q6N075 450 aa17.7■□□□□ 0.42
USP28-208ENST00000540438 PLPPR4Q7Z2D5 763 aa17.7■□□□□ 0.42
USP28-208ENST00000540438 CCDC125Q86Z20 511 aa17.7■□□□□ 0.42
USP28-208ENST00000540438 STMN4Q9H169 189 aaPredicted RBP17.7■□□□□ 0.42
USP28-208ENST00000540438 RAB6BQ9NRW1 208 aa17.7■□□□□ 0.42
USP28-208ENST00000540438 KCNG1Q9UIX4 513 aa17.7■□□□□ 0.42
USP28-208ENST00000540438 TNFSF13BQ9Y275 285 aa17.7■□□□□ 0.42
USP28-208ENST00000540438 UGT1A9O60656 530 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 LGR5O75473 907 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 SMPD1P17405 629 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 OSBPP22059 807 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 ELK3P41970 407 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 HADHQ16836 314 aaKnown RBP17.69■□□□□ 0.42
USP28-208ENST00000540438 TNFAIP8L3Q5GJ75 292 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 CATSPER4Q7RTX7 472 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 TTC30AQ86WT1 665 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 MAML1Q92585 1016 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 ROPN1BQ9BZX4 212 aaPredicted RBP17.69■□□□□ 0.42
USP28-208ENST00000540438 ROPN1Q9HAT0 212 aaPredicted RBP17.69■□□□□ 0.42
USP28-208ENST00000540438 UGT1A7Q9HAW7 530 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 UGT1A10Q9HAW8 530 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 UGT1A8Q9HAW9 530 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 WDR3Q9UNX4 943 aaKnown RBP eCLIP17.69■□□□□ 0.42
USP28-208ENST00000540438 DOCK3Q8IZD9 2030 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 NEFHP12036 1026 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 MAN1A1P33908 653 aa17.69■□□□□ 0.42
USP28-208ENST00000540438 PITX1P78337 314 aaPredicted RBP17.69■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms