RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 BMP3P12645 472 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 HSPA6P17066 643 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 RCVRNP35243 200 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 PIK3CAP42336 1068 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 KCNJ1P48048 391 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 GALCP54803 685 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 NR1H2P55055 460 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 PSMC1P62191 440 aaKnown RBP9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 CDK16Q00536 496 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 PPATQ06203 517 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 APOFQ13790 326 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 LRP8Q14114 963 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 IL23RQ5VWK5 629 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 PCNX4Q63HM2 1172 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 SPOPLQ6IQ16 392 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 C11orf74Q86VG3 221 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 LDHDQ86WU2 507 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 GUF1Q8N442 669 aaKnown RBP9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 SLC43A3Q8NBI5 491 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 ICA1LQ8NDH6 482 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 SLC35G2Q8TBE7 412 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 DCAF4Q8WV16 495 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 USP6NLQ92738 828 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 GMCL1Q96IK5 515 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 MAELQ96JY0 434 aaKnown RBP9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 POP1Q99575 1024 aaKnown RBP9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 VTA1Q9NP79 307 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 FBXO9Q9UK97 447 aaPredicted RBP9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 IVNS1ABPQ9Y6Y0 642 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 ATP8B3O60423 1300 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 USP17L10C9JJH3 530 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 TNFRSF10AO00220 468 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 DENRO43583 198 aaKnown RBP9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 RBP3P10745 1247 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 NAT2P11245 290 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 ACTN1P12814 892 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 PON1P27169 355 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 FDFT1P37268 417 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 COILP38432 576 aaPredicted RBP9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 SNAPC2Q13487 334 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 MTMR2Q13614 643 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 E2F2Q14209 437 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 PUS10Q3MIT2 529 aaKnown RBP9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 ARSHQ5FYA8 562 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 NIPAL1Q6NVV3 410 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 RHBDF2Q6PJF5 856 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 ADGRF4Q8IZF3 695 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 RNF169Q8NCN4 708 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 ZNF280CQ8ND82 737 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 GLIS3Q8NEA6 775 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 GPKOWQ92917 476 aaPredicted RBP eCLIP9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 EME1Q96AY2 570 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 PRPF18Q99633 342 aaKnown RBP9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 TRABDQ9H4I3 376 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 ZNF696Q9H7X3 374 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 JMJD4Q9H9V9 463 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 RIC8AQ9NPQ8 531 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 GIN1Q9NXP7 522 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 QPCTLQ9NXS2 382 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 ARMCX1Q9P291 453 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 APPL1Q9UKG1 709 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 PCDHA4Q9UN74 947 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 SNX9Q9Y5X1 595 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 SNCAIPQ9Y6H5 919 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 TRIM64CA6NLI5 447 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 TNFAIP8O95379 198 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 C6orf222P0C671 652 aaPredicted RBP9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 CA4P22748 312 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 MZF1P28698 734 aaPredicted RBP9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 IREB2P48200 963 aaKnown RBP9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 CDK9P50750 372 aaKnown RBP9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 SLC18A1P54219 525 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 RPS3AP61247 264 aaKnown RBP9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 ARHGAP4P98171 946 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 MYBPC1Q00872 1141 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 NR1H3Q13133 447 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 EFTUD2Q15029 972 aaKnown RBP eCLIP9.89□□□□□ -0.838e-9■■■□□ 15.7
CTNNA1-243ENST00000540387 RASA2Q15283 850 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 TRIP10Q15642 601 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 PFKFB3Q16875 520 aaPredicted RBP9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 NOL9Q5SY16 702 aaKnown RBP9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 AHI1Q8N157 1196 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 C4orf33Q8N1A6 199 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 ACTRT2Q8TDY3 377 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 ERLEC1Q96DZ1 483 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 TRIM55Q9BYV6 548 aa9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 CLK4Q9HAZ1 481 aaKnown RBP9.89□□□□□ -0.83
CTNNA1-243ENST00000540387 SYNGAP1Q96PV0 1343 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 ANKRD34BA5PLL1 514 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 RSPH10B2B2RC85 870 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 FCHO1O14526 889 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 CYP26A1O43174 497 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 RSPH10BP0C881 870 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 THRAP10827 490 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 GSSP48637 474 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 TUFMP49411 452 aaKnown RBP9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 BACE1P56817 501 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 AMPD3Q01432 767 aa9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 IKQ13123 557 aaPredicted RBP9.88□□□□□ -0.83
CTNNA1-243ENST00000540387 NR1D2Q14995 579 aa9.88□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 18.1 ms