RNA–Protein interactions for RNA: ENST00000537490.1

USP28-203, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 567 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-203ENST00000537490 PLEKHO2Q8TD55 490 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 NETO1Q8TDF5 533 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 GAB3Q8WWW8 586 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 CD101Q93033 1021 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 C8orf48Q96LL4 319 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 HHIPQ96QV1 700 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 FNBP1Q96RU3 617 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 TTLL2Q9BWV7 592 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 RNF38Q9H0F5 515 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 ARRDC1-AS1Q9H2J1 176 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 SNX25Q9H3E2 840 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 DPEP3Q9H4B8 488 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 SLC39A2Q9NP94 309 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 TMEM30AQ9NV96 361 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 TRPM5Q9NZQ8 1165 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 PCDHA7Q9UN72 937 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 ARHGAP26Q9UNA1 814 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 SPTBN2O15020 2390 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 TCHHQ07283 1943 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 SDK1Q7Z5N4 2213 aa9.03□□□□□ -0.96
USP28-203ENST00000537490 ZNF840PA6NDX5 716 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 F8VP50 259 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 LEFTY2O00292 366 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 CLDN5O00501 218 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 FAM163BP0C2L3 166 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 CCDC192P0DO97 292 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 PTPN1P18031 435 aaKnown RBP9.02□□□□□ -0.97
USP28-203ENST00000537490 ANXA13P27216 316 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 OPRD1P41143 372 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 AFMP43652 599 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 RAP1GAPP47736 663 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 CASP4P49662 377 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 MYL6P60660 151 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 SNRPFP62306 86 aaKnown RBP9.02□□□□□ -0.97
USP28-203ENST00000537490 PSMD2Q13200 908 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 CUL4BQ13620 913 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 SF3A2Q15428 464 aaKnown RBP9.02□□□□□ -0.97
USP28-203ENST00000537490 BMT2Q1RMZ1 405 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 GAB4Q2WGN9 574 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 WDR72Q3MJ13 1102 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 FBXO43Q4G163 708 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 SYT13Q7L8C5 426 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 HS2ST1Q7LGA3 356 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 CACNA2D4Q7Z3S7 1137 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 CAMKK1Q8N5S9 505 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 RPLP0P6Q8NHW5 317 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 ATP2A3Q93084 1043 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 SNX21Q969T3 373 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 ELMO3Q96BJ8 720 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 CEP295NLQ96MC4 621 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 B3GNT5Q9BYG0 378 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 ZNF518BQ9C0D4 1074 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 XYLT2Q9H1B5 865 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 RXFP3Q9NSD7 469 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 NXF1Q9UBU9 619 aaKnown RBP9.02□□□□□ -0.97
USP28-203ENST00000537490 KIF26AQ9ULI4 1882 aaPredicted RBP9.02□□□□□ -0.97
USP28-203ENST00000537490 UBE4BO95155 1302 aa9.02□□□□□ -0.97
USP28-203ENST00000537490 PVALEFA0A1B0GWK0 134 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 A8MXQ7 604 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 SCAMP3O14828 347 aaKnown RBP9.01□□□□□ -0.97
USP28-203ENST00000537490 TRIM66O15016 1216 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 DCLK1O15075 740 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 EXOC3O60645 756 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 EPN2O95208 641 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 STAU1O95793 577 aaKnown RBP9.01□□□□□ -0.97
USP28-203ENST00000537490 F13A1P00488 732 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 ABL1P00519 1130 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 ZNF806P0C7X5 589 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 ZSCAN22P10073 491 aaPredicted RBP9.01□□□□□ -0.97
USP28-203ENST00000537490 PFKLP17858 780 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 CDH8P55286 799 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 TNNC1P63316 161 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 NOP14P78316 857 aaKnown RBP9.01□□□□□ -0.97
USP28-203ENST00000537490 SLC7A9P82251 487 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 TAF10Q12962 218 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 NR1H3Q13133 447 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 TRPC3Q13507 836 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 DMC1Q14565 340 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 KNOP1Q1ED39 458 aaKnown RBP9.01□□□□□ -0.97
USP28-203ENST00000537490 PLK5Q496M5 336 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 RESP18Q5W5W9 173 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 C12orf56Q8IXR9 622 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 GRAMD1CQ8IYS0 662 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 ADGRG2Q8IZP9 1017 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 USP33Q8TEY7 942 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 EXOC4Q96A65 974 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 LOXL4Q96JB6 756 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 CNTNAP3BQ96NU0 1288 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 CNTNAP3Q9BZ76 1288 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 SMOC1Q9H4F8 434 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 MAGEF1Q9HAY2 307 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 SMPD4Q9NXE4 827 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 SERTAD1Q9UHV2 236 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 CPQQ9Y646 472 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 ATG2BQ96BY7 2078 aa9.01□□□□□ -0.97
USP28-203ENST00000537490 DENND4CQ5VZ89 1909 aa9□□□□□ -0.97
USP28-203ENST00000537490 LRRIQ3A6PVS8 624 aaPredicted RBP9□□□□□ -0.97
USP28-203ENST00000537490 K7EQS6 105 aa9□□□□□ -0.97
USP28-203ENST00000537490 KLRC4O43908 158 aa9□□□□□ -0.97
USP28-203ENST00000537490 PHACTR2O75167 634 aa9□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms