RNA–Protein interactions for RNA: ENST00000534705.5

USP48-215, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 566 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-215ENST00000534705 UBR1Q8IWV7 1749 aa4.34□□□□□ -1.71
USP48-215ENST00000534705 ARHGEF17Q96PE2 2063 aaPredicted RBP4.34□□□□□ -1.71
USP48-215ENST00000534705 E9PCH4 1651 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 UNC13BO14795 1591 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 KDM5DQ9BY66 1539 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 DUOX2Q9NRD8 1548 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 ADGRL2O95490 1459 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 ABCC5O15440 1437 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 DAPK1P53355 1430 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 SPAG9O60271 1321 aaKnown RBP4.33□□□□□ -1.72
USP48-215ENST00000534705 GOLGA6CA6NDK9 693 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 GOLGA6BA6NDN3 693 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 PHGDHO43175 533 aaKnown RBP4.33□□□□□ -1.72
USP48-215ENST00000534705 FRS3O43559 492 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 CTNND1O60716 968 aaKnown RBP4.33□□□□□ -1.72
USP48-215ENST00000534705 UNC5CO95185 931 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 GOLGA6DP0CG33 693 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 NPR1P16066 1061 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 PPP3CBP16298 524 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 HDCP19113 662 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 PPIFP30405 207 aaKnown RBP4.33□□□□□ -1.72
USP48-215ENST00000534705 GCLCP48506 637 aaPredicted RBP4.33□□□□□ -1.72
USP48-215ENST00000534705 WNT3P56703 355 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 LOXL3P58215 753 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 SIM1P81133 766 aaPredicted RBP4.33□□□□□ -1.72
USP48-215ENST00000534705 LRRC41Q15345 812 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 TEDDM1Q5T9Z0 273 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 SFRP4Q6FHJ7 346 aaPredicted RBP4.33□□□□□ -1.72
USP48-215ENST00000534705 KIAA0319LQ8IZA0 1049 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 SLC30A5Q8TAD4 765 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 PPP1R35Q8TAP8 253 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 MYCBPAPQ8TBZ2 947 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 B3GNT5Q9BYG0 378 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 TRIM54Q9BYV2 358 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 GOLGA6AQ9NYA3 693 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 SLC17A6Q9P2U8 582 aa4.33□□□□□ -1.72
USP48-215ENST00000534705 XIRP1Q702N8 1843 aaKnown RBP4.32□□□□□ -1.72
USP48-215ENST00000534705 STRCP1A6NGW2 1772 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 KDM5AP29375 1690 aaKnown RBP4.32□□□□□ -1.72
USP48-215ENST00000534705 DHX29Q7Z478 1369 aaKnown RBP4.32□□□□□ -1.72
USP48-215ENST00000534705 CAPN8A6NHC0 703 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 PRPF3O43395 683 aaKnown RBP4.32□□□□□ -1.72
USP48-215ENST00000534705 KCNAB3O43448 404 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 MARCH6O60337 910 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 C1QL1O75973 258 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 HRGP04196 525 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 GRPP07492 148 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 CYP2C9P11712 490 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 EN2P19622 333 aaPredicted RBP4.32□□□□□ -1.72
USP48-215ENST00000534705 CD6P30203 668 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 KCNJ5P48544 419 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 GBX1Q14549 363 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 MLC1Q15049 377 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 TXNRD1Q16881 649 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 LONRF3Q496Y0 759 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 AMOTQ4VCS5 1084 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 ZNF425Q6IV72 752 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 SRGAP1Q7Z6B7 1085 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 MYO1HQ8N1T3 1032 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 FAM46DQ8NEK8 389 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 FBXL20Q96IG2 436 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 PBKQ96KB5 322 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 FAM204AQ9H8W3 233 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 ARMT1Q9H993 441 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 KLC4Q9NSK0 619 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 MRPS18AQ9NVS2 196 aaKnown RBP4.32□□□□□ -1.72
USP48-215ENST00000534705 ZNF70Q9UC06 446 aaPredicted RBP4.32□□□□□ -1.72
USP48-215ENST00000534705 RGS17Q9UGC6 210 aaPredicted RBP4.32□□□□□ -1.72
USP48-215ENST00000534705 NOB1Q9ULX3 412 aaKnown RBP4.32□□□□□ -1.72
USP48-215ENST00000534705 PCDHA6Q9UN73 950 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 TET3O43151 1660 aa4.32□□□□□ -1.72
USP48-215ENST00000534705 SPATA31D1Q6ZQQ2 1576 aa4.31□□□□□ -1.72
USP48-215ENST00000534705 CEP170BQ9Y4F5 1589 aaPredicted RBP4.31□□□□□ -1.72
USP48-215ENST00000534705 ABCC3O15438 1527 aa4.31□□□□□ -1.72
USP48-215ENST00000534705 PTPRKQ15262 1439 aa4.31□□□□□ -1.72
USP48-215ENST00000534705 ARID4BQ4LE39 1312 aaPredicted RBP4.31□□□□□ -1.72
USP48-215ENST00000534705 SALL3Q9BXA9 1300 aa4.31□□□□□ -1.72
USP48-215ENST00000534705 A0A1W2PPL8 197 aa4.31□□□□□ -1.72
USP48-215ENST00000534705 LRRC3CA6NJW4 275 aa4.31□□□□□ -1.72
USP48-215ENST00000534705 F5H697 171 aa4.31□□□□□ -1.72
USP48-215ENST00000534705 XRCC6P12956 609 aaKnown RBP eCLIP4.31□□□□□ -1.72
USP48-215ENST00000534705 GRIA3P42263 894 aa4.31□□□□□ -1.72
USP48-215ENST00000534705 SOX10P56693 466 aa4.31□□□□□ -1.72
USP48-215ENST00000534705 BOP1Q14137 746 aaKnown RBP4.31□□□□□ -1.72
USP48-215ENST00000534705 IQCB1Q15051 598 aa4.31□□□□□ -1.72
USP48-215ENST00000534705 GFOD2Q3B7J2 385 aa4.31□□□□□ -1.72
USP48-215ENST00000534705 RBM20Q5T481 1227 aaKnown RBP4.31□□□□□ -1.72
USP48-215ENST00000534705 NPNTQ6UXI9 565 aa4.31□□□□□ -1.72
USP48-215ENST00000534705 SLC30A10Q6XR72 485 aa4.31□□□□□ -1.72
USP48-215ENST00000534705 ZNF783Q6ZMS7 281 aa4.31□□□□□ -1.72
USP48-215ENST00000534705 MAEAQ7L5Y9 396 aa4.31□□□□□ -1.72
USP48-215ENST00000534705 CELF5Q8N6W0 485 aaKnown RBP4.31□□□□□ -1.72
USP48-215ENST00000534705 FAM136AQ96C01 138 aa4.31□□□□□ -1.72
USP48-215ENST00000534705 SUCLG2Q96I99 432 aa4.31□□□□□ -1.72
USP48-215ENST00000534705 SLC46A1Q96NT5 459 aa4.31□□□□□ -1.72
USP48-215ENST00000534705 ANP32EQ9BTT0 268 aa4.31□□□□□ -1.72
USP48-215ENST00000534705 AMBRA1Q9C0C7 1298 aa4.31□□□□□ -1.72
USP48-215ENST00000534705 SMOC2Q9H3U7 446 aa4.31□□□□□ -1.72
USP48-215ENST00000534705 ZMAT3Q9HA38 289 aaKnown RBP4.31□□□□□ -1.72
USP48-215ENST00000534705 ATP6V0A4Q9HBG4 840 aa4.31□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms