RNA–Protein interactions for RNA: ENST00000533523.5

CHMP4A-207, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 1 (best)

Gene CHMP4A, Length 1,266 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-207ENST00000533523 NOL4O94818 638 aa16.85■□□□□ 0.29
CHMP4A-207ENST00000533523 GCNT3O95395 438 aa16.85■□□□□ 0.29
CHMP4A-207ENST00000533523 KRT19P08727 400 aa16.85■□□□□ 0.29
CHMP4A-207ENST00000533523 GALK1P51570 392 aa16.85■□□□□ 0.29
CHMP4A-207ENST00000533523 POU5F1Q01860 360 aaKnown RBP16.85■□□□□ 0.29
CHMP4A-207ENST00000533523 FAM160A1Q05DH4 1040 aa16.85■□□□□ 0.29
CHMP4A-207ENST00000533523 KCNA1Q09470 495 aa16.85■□□□□ 0.29
CHMP4A-207ENST00000533523 ZNF77Q15935 545 aa16.85■□□□□ 0.29
CHMP4A-207ENST00000533523 E2F4Q16254 413 aa16.85■□□□□ 0.29
CHMP4A-207ENST00000533523 PLK5Q496M5 336 aa16.85■□□□□ 0.29
CHMP4A-207ENST00000533523 FBXO43Q4G163 708 aa16.85■□□□□ 0.29
CHMP4A-207ENST00000533523 L1TD1Q5T7N2 865 aaKnown RBP16.85■□□□□ 0.29
CHMP4A-207ENST00000533523 SCN4BQ8IWT1 228 aa16.85■□□□□ 0.29
CHMP4A-207ENST00000533523 ADGRF2Q8IZF7 708 aa16.85■□□□□ 0.29
CHMP4A-207ENST00000533523 CAMKK1Q8N5S9 505 aa16.85■□□□□ 0.29
CHMP4A-207ENST00000533523 CD101Q93033 1021 aa16.85■□□□□ 0.29
CHMP4A-207ENST00000533523 DHX58Q96C10 678 aa16.85■□□□□ 0.29
CHMP4A-207ENST00000533523 ACCSQ96QU6 501 aa16.85■□□□□ 0.29
CHMP4A-207ENST00000533523 TMEM206Q9H813 350 aa16.85■□□□□ 0.29
CHMP4A-207ENST00000533523 OLFML3Q9NRN5 406 aa16.85■□□□□ 0.29
CHMP4A-207ENST00000533523 VPS45Q9NRW7 570 aa16.85■□□□□ 0.29
CHMP4A-207ENST00000533523 ZMIZ1Q9ULJ6 1067 aa16.85■□□□□ 0.29
CHMP4A-207ENST00000533523 CACNA1EQ15878 2313 aa16.85■□□□□ 0.29
CHMP4A-207ENST00000533523 FAM237AA0A1B0GTK4 181 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 GOLGA8IPA6NC78 632 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 GOLGA8JA6NMD2 632 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 GIPC1O14908 333 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 DCLK1O15075 740 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 APBB3O95704 486 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 USP17L7P0C7H9 530 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 PFKFB1P16118 471 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 SPINK2P20155 84 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 GBP1P32455 592 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 CREB5Q02930 508 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 DMC1Q14565 340 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 KCNB1Q14721 858 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 SKOR2Q2VWA4 1001 aaPredicted RBP16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 PLA2G2CQ5R387 149 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 RNF43Q68DV7 783 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 STXBP4Q6ZWJ1 553 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 OSTM1Q86WC4 334 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 SPATA2LQ8IUW3 424 aaPredicted RBP16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 SYCP3Q8IZU3 236 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 TMEM86AQ8N2M4 240 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 CSGALNACT2Q8N6G5 542 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 CACTINQ8WUQ7 758 aaKnown RBP16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 OSCP1Q8WVF1 389 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 TRMT2BQ96GJ1 504 aaKnown RBP16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 SLC22A12Q96S37 553 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 ACBD6Q9BR61 282 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 EDEM2Q9BV94 578 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 MTMR12Q9C0I1 747 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 PANK4Q9NVE7 773 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 KBTBD4Q9NVX7 518 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 GTF3C4Q9UKN8 822 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 ITGA11Q9UKX5 1188 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 PCDHB13Q9Y5F0 798 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 SNX9Q9Y5X1 595 aa16.84■□□□□ 0.29
CHMP4A-207ENST00000533523 SOBPA7XYQ1 873 aa16.83■□□□□ 0.28
CHMP4A-207ENST00000533523 HCRTO43612 131 aa16.83■□□□□ 0.28
CHMP4A-207ENST00000533523 TMEM191BP0C7N4 346 aa16.83■□□□□ 0.28
CHMP4A-207ENST00000533523 PCSK1P29120 753 aa16.83■□□□□ 0.28
CHMP4A-207ENST00000533523 NDUFA8P51970 172 aa16.83■□□□□ 0.28
CHMP4A-207ENST00000533523 KLHL40Q2TBA0 621 aa16.83■□□□□ 0.28
CHMP4A-207ENST00000533523 SYT13Q7L8C5 426 aa16.83■□□□□ 0.28
CHMP4A-207ENST00000533523 LRRC52Q8N7C0 313 aa16.83■□□□□ 0.28
CHMP4A-207ENST00000533523 ARL14EPQ8N8R7 260 aaPredicted RBP16.83■□□□□ 0.28
CHMP4A-207ENST00000533523 SH3RF2Q8TEC5 729 aa16.83■□□□□ 0.28
CHMP4A-207ENST00000533523 CEP192Q8TEP8 1941 aa16.83■□□□□ 0.28
CHMP4A-207ENST00000533523 ZC3H10Q96K80 434 aaKnown RBP16.83■□□□□ 0.28
CHMP4A-207ENST00000533523 CYP2S1Q96SQ9 504 aa16.83■□□□□ 0.28
CHMP4A-207ENST00000533523 PKMYT1Q99640 499 aa16.83■□□□□ 0.28
CHMP4A-207ENST00000533523 HELZ2Q9BYK8 2649 aaKnown RBP16.83■□□□□ 0.28
CHMP4A-207ENST00000533523 DUSP15Q9H1R2 295 aaPredicted RBP16.83■□□□□ 0.28
CHMP4A-207ENST00000533523 HPSEQ9Y251 543 aa16.83■□□□□ 0.28
CHMP4A-207ENST00000533523 PLXND1Q9Y4D7 1925 aa16.82■□□□□ 0.28
CHMP4A-207ENST00000533523 TNRC6BQ9UPQ9 1833 aaKnown RBP16.82■□□□□ 0.28
CHMP4A-207ENST00000533523 C2orf78A6NCI8 922 aa16.82■□□□□ 0.28
CHMP4A-207ENST00000533523 POLR2DO15514 142 aaKnown RBP16.82■□□□□ 0.28
CHMP4A-207ENST00000533523 RHOBTB1O94844 696 aa16.82■□□□□ 0.28
CHMP4A-207ENST00000533523 CASP5P51878 434 aa16.82■□□□□ 0.28
CHMP4A-207ENST00000533523 DGKEP52429 567 aa16.82■□□□□ 0.28
CHMP4A-207ENST00000533523 SEC13P55735 322 aa16.82■□□□□ 0.28
CHMP4A-207ENST00000533523 EML3Q32P44 896 aa16.82■□□□□ 0.28
CHMP4A-207ENST00000533523 LMBRD2Q68DH5 695 aaPredicted RBP16.82■□□□□ 0.28
CHMP4A-207ENST00000533523 PSAPL1Q6NUJ1 521 aa16.82■□□□□ 0.28
CHMP4A-207ENST00000533523 CNNM4Q6P4Q7 775 aa16.82■□□□□ 0.28
CHMP4A-207ENST00000533523 FMR1NBQ8N0W7 255 aaPredicted RBP16.82■□□□□ 0.28
CHMP4A-207ENST00000533523 ENGASEQ8NFI3 743 aa16.82■□□□□ 0.28
CHMP4A-207ENST00000533523 TSTD1Q8NFU3 115 aa16.82■□□□□ 0.28
CHMP4A-207ENST00000533523 EZH1Q92800 747 aaPredicted RBP16.82■□□□□ 0.28
CHMP4A-207ENST00000533523 CBWD1Q9BRT8 395 aa16.82■□□□□ 0.28
CHMP4A-207ENST00000533523 STRA6Q9BX79 667 aa16.82■□□□□ 0.28
CHMP4A-207ENST00000533523 TPSD1Q9BZJ3 242 aa16.82■□□□□ 0.28
CHMP4A-207ENST00000533523 TRIM9Q9C026 710 aa16.82■□□□□ 0.28
CHMP4A-207ENST00000533523 PCIF1Q9H4Z3 704 aa16.82■□□□□ 0.28
CHMP4A-207ENST00000533523 PDE11AQ9HCR9 933 aa16.82■□□□□ 0.28
CHMP4A-207ENST00000533523 R3HCC1Q9Y3T6 440 aaKnown RBP16.82■□□□□ 0.28
CHMP4A-207ENST00000533523 FLNBO75369 2602 aaKnown RBP16.82■□□□□ 0.28
CHMP4A-207ENST00000533523 KCNK5O95279 499 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 29.3 ms