RNA–Protein interactions for RNA: ENST00000531032.5

VPS28-214, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best)

Gene VPS28, Length 573 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-214ENST00000531032 SNRPFP62306 86 aaKnown RBP12.12□□□□□ -0.47
VPS28-214ENST00000531032 NOP14P78316 857 aaKnown RBP12.12□□□□□ -0.47
VPS28-214ENST00000531032 ZXDBP98169 803 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 CYP27A1Q02318 531 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 CYP24A1Q07973 514 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 UNC13DQ70J99 1090 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 SYT13Q7L8C5 426 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 KBTBD6Q86V97 674 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 HSCBQ8IWL3 235 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 KIAA1958Q8N8K9 716 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 RPLP0P6Q8NHW5 317 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 SCFD1Q8WVM8 642 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 ZC3H10Q96K80 434 aaKnown RBP12.12□□□□□ -0.47
VPS28-214ENST00000531032 ZNF396Q96N95 335 aaPredicted RBP12.12□□□□□ -0.47
VPS28-214ENST00000531032 HHIPQ96QV1 700 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 MMS19Q96T76 1030 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 C7orf25Q9BPX7 421 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 MRPL45Q9BRJ2 306 aaKnown RBP12.12□□□□□ -0.47
VPS28-214ENST00000531032 GZF1Q9H116 711 aaPredicted RBP12.12□□□□□ -0.47
VPS28-214ENST00000531032 ARRDC1-AS1Q9H2J1 176 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 MAGEF1Q9HAY2 307 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 POLR3BQ9NW08 1133 aaPredicted RBP12.12□□□□□ -0.47
VPS28-214ENST00000531032 EHD2Q9NZN4 543 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 NME7Q9Y5B8 376 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 PCDHGA5Q9Y5G8 931 aa12.12□□□□□ -0.47
VPS28-214ENST00000531032 EPG5Q9HCE0 2579 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 TPRP12270 2363 aaKnown RBP12.11□□□□□ -0.47
VPS28-214ENST00000531032 ZNF840PA6NDX5 716 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 F8VP50 259 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 AXIN1O15169 862 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 NFATC1O95644 943 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 STAU1O95793 577 aaKnown RBP12.11□□□□□ -0.47
VPS28-214ENST00000531032 OLFM2O95897 454 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 HSP90AA1P07900 732 aaKnown RBP12.11□□□□□ -0.47
VPS28-214ENST00000531032 TNNI1P19237 187 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 ANXA13P27216 316 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 GNL1P36915 607 aaPredicted RBP12.11□□□□□ -0.47
VPS28-214ENST00000531032 PPP3CCP48454 512 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 SLC7A9P82251 487 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 NR1H3Q13133 447 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 BMT2Q1RMZ1 405 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 MDH1BQ5I0G3 518 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 PPM1JQ5JR12 505 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 PLA2G2CQ5R387 149 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 XXYLT1Q8NBI6 393 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 RDH13Q8NBN7 331 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 TTC16Q8NEE8 873 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 ACDQ96AP0 544 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 CCDC127Q96BQ5 260 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 C8orf48Q96LL4 319 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 CNTNAP3BQ96NU0 1288 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 FNBP1Q96RU3 617 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 CNTNAP3Q9BZ76 1288 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 LINC00597Q9H2U6 94 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 SNX25Q9H3E2 840 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 TRPM5Q9NZQ8 1165 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 TFIP11Q9UBB9 837 aaKnown RBP12.11□□□□□ -0.47
VPS28-214ENST00000531032 EBF1Q9UH73 591 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 SDK1Q7Z5N4 2213 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 ACACBO00763 2458 aa12.11□□□□□ -0.47
VPS28-214ENST00000531032 LEFTY2O00292 366 aa12.1□□□□□ -0.47
VPS28-214ENST00000531032 CLIC2O15247 247 aa12.1□□□□□ -0.47
VPS28-214ENST00000531032 APBB3O95704 486 aa12.1□□□□□ -0.47
VPS28-214ENST00000531032 OAS1P00973 400 aaKnown RBP12.1□□□□□ -0.47
VPS28-214ENST00000531032 OPRD1P41143 372 aa12.1□□□□□ -0.47
VPS28-214ENST00000531032 CYP2J2P51589 502 aa12.1□□□□□ -0.47
VPS28-214ENST00000531032 TNNC1P63316 161 aa12.1□□□□□ -0.47
VPS28-214ENST00000531032 DMC1Q14565 340 aa12.1□□□□□ -0.47
VPS28-214ENST00000531032 SF3A2Q15428 464 aaKnown RBP12.1□□□□□ -0.47
VPS28-214ENST00000531032 GAB4Q2WGN9 574 aa12.1□□□□□ -0.47
VPS28-214ENST00000531032 WDR72Q3MJ13 1102 aa12.1□□□□□ -0.47
VPS28-214ENST00000531032 PLK5Q496M5 336 aa12.1□□□□□ -0.47
VPS28-214ENST00000531032 AASDHQ4L235 1098 aaPredicted RBP12.1□□□□□ -0.47
VPS28-214ENST00000531032 HS2ST1Q7LGA3 356 aa12.1□□□□□ -0.47
VPS28-214ENST00000531032 NELFCDQ8IXH7 590 aa12.1□□□□□ -0.47
VPS28-214ENST00000531032 C12orf56Q8IXR9 622 aa12.1□□□□□ -0.47
VPS28-214ENST00000531032 OR6B3Q8NGW1 331 aa12.1□□□□□ -0.47
VPS28-214ENST00000531032 CCDC26Q8TAB7 109 aa12.1□□□□□ -0.47
VPS28-214ENST00000531032 DDX1Q92499 740 aaKnown RBP12.1□□□□□ -0.47
VPS28-214ENST00000531032 ZNF516Q92618 1163 aa12.1□□□□□ -0.47
VPS28-214ENST00000531032 ELOVL4Q9GZR5 314 aa12.1□□□□□ -0.47
VPS28-214ENST00000531032 RNF38Q9H0F5 515 aa12.1□□□□□ -0.47
VPS28-214ENST00000531032 XYLT2Q9H1B5 865 aa12.1□□□□□ -0.47
VPS28-214ENST00000531032 DPEP3Q9H4B8 488 aa12.1□□□□□ -0.47
VPS28-214ENST00000531032 TMEM30AQ9NV96 361 aa12.1□□□□□ -0.47
VPS28-214ENST00000531032 CGNQ9P2M7 1197 aaKnown RBP12.1□□□□□ -0.47
VPS28-214ENST00000531032 KMT2BQ9UMN6 2715 aaPredicted RBP12.09□□□□□ -0.47
VPS28-214ENST00000531032 PVALEFA0A1B0GWK0 134 aa12.09□□□□□ -0.47
VPS28-214ENST00000531032 K7EQS6 105 aa12.09□□□□□ -0.47
VPS28-214ENST00000531032 TM4SF5O14894 197 aa12.09□□□□□ -0.47
VPS28-214ENST00000531032 POLR2DO15514 142 aaKnown RBP12.09□□□□□ -0.47
VPS28-214ENST00000531032 CYP17A1P05093 508 aa12.09□□□□□ -0.47
VPS28-214ENST00000531032 PTPN1P18031 435 aaKnown RBP12.09□□□□□ -0.47
VPS28-214ENST00000531032 CASP1P29466 404 aa12.09□□□□□ -0.47
VPS28-214ENST00000531032 ATICP31939 592 aa12.09□□□□□ -0.47
VPS28-214ENST00000531032 MPLP40238 635 aa12.09□□□□□ -0.47
VPS28-214ENST00000531032 CACNA2D1P54289 1103 aa12.09□□□□□ -0.47
VPS28-214ENST00000531032 MYL6P60660 151 aa12.09□□□□□ -0.47
VPS28-214ENST00000531032 TAF10Q12962 218 aa12.09□□□□□ -0.47
VPS28-214ENST00000531032 CCDC6Q16204 474 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms