RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 NCR1O76036 304 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 TNFRSF6BO95407 300 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 POMCP01189 267 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 A1BGP04217 495 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 POLBP06746 335 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 ITGA5P08648 1049 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 C1SP09871 688 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 CKMT1AP12532 417 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 GNAT2P19087 354 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 BTF3P20290 206 aaKnown RBP3.78□□□□□ -1.8
CD44-229ENST00000528672 HIBADHP31937 336 aaKnown RBP3.78□□□□□ -1.8
CD44-229ENST00000528672 ELF1P32519 619 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 KRT9P35527 623 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 ZXDAP98168 799 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 MPP1Q00013 466 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 PDE1CQ14123 709 aaPredicted RBP3.78□□□□□ -1.8
CD44-229ENST00000528672 SLC29A2Q14542 456 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 KCTD2Q14681 263 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 ZIK1Q3SY52 487 aaPredicted RBP3.78□□□□□ -1.8
CD44-229ENST00000528672 ARHGAP15Q53QZ3 475 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 SPDYAQ5MJ70 313 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 TANGO2Q6ICL3 276 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 SULT6B1Q6IMI4 303 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 FAM180BQ6P0A1 224 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 CRIP3Q6Q6R5 217 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 KLHL17Q6TDP4 642 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 USP49Q70CQ1 688 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 ZNF365Q70YC5 407 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 DOK3Q7L591 496 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 KRT28Q7Z3Y7 464 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 USP37Q86T82 979 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 PDSS2Q86YH6 399 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 GATAD2AQ86YP4 633 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 CCDC117Q8IWD4 279 aaPredicted RBP3.78□□□□□ -1.8
CD44-229ENST00000528672 ESX1Q8N693 406 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 CCDC89Q8N998 374 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 IL17DQ8TAD2 202 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 STT3BQ8TCJ2 826 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 ASB12Q8WXK4 309 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 RAPGEF4Q8WZA2 1011 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 HDAC2Q92769 488 aaKnown RBP3.78□□□□□ -1.8
CD44-229ENST00000528672 EID2BQ96D98 161 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 PRPF18Q99633 342 aaKnown RBP3.78□□□□□ -1.8
CD44-229ENST00000528672 PYM1Q9BRP8 204 aaKnown RBP3.78□□□□□ -1.8
CD44-229ENST00000528672 KATNAL1Q9BW62 490 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 GPR87Q9BY21 358 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 TTYH3Q9C0H2 523 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 MS4A7Q9GZW8 240 aaPredicted RBP3.78□□□□□ -1.8
CD44-229ENST00000528672 SAYSD1Q9NPB0 183 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 RIC8AQ9NPQ8 531 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 HEYLQ9NQ87 328 aaPredicted RBP3.78□□□□□ -1.8
CD44-229ENST00000528672 WASH6PQ9NQA3 447 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 RASSF1Q9NS23 344 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 GGA3Q9NZ52 723 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 JKAMPQ9P055 326 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 NRBP1Q9UHY1 535 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 HERC5Q9UII4 1024 aaKnown RBP3.78□□□□□ -1.8
CD44-229ENST00000528672 MID2Q9UJV3 735 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 SLC13A4Q9UKG4 626 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 SCAF8Q9UPN6 1271 aaKnown RBP3.78□□□□□ -1.8
CD44-229ENST00000528672 HDAC5Q9UQL6 1122 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 MRPS17Q9Y2R5 130 aaKnown RBP3.78□□□□□ -1.8
CD44-229ENST00000528672 TMEM98Q9Y2Y6 226 aa3.78□□□□□ -1.8
CD44-229ENST00000528672 XDHP47989 1333 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 HMX3A6NHT5 357 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 PRSS47A8MTI9 375 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 PRR5-ARHGAP8B1AHC4 643 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 RAB27BO00194 218 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 TIMM44O43615 452 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 ASNA1O43681 348 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 CD4P01730 458 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 ANXA1P04083 346 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 ITGA2BP08514 1039 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 SNRPA1P09661 255 aaKnown RBP3.77□□□□□ -1.81
CD44-229ENST00000528672 IFIT1P09914 478 aaKnown RBP3.77□□□□□ -1.81
CD44-229ENST00000528672 XRCC6P12956 609 aaKnown RBP eCLIP3.77□□□□□ -1.81
CD44-229ENST00000528672 ALAS1P13196 640 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 TACR2P21452 398 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 RXRGP48443 463 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 ZNF134P52741 427 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 MAPKAPK3Q16644 382 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 FAM110CQ1W6H9 321 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 CD300EQ496F6 205 aaPredicted RBP3.77□□□□□ -1.81
CD44-229ENST00000528672 VPS53Q5VIR6 699 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 B3GNTL1Q67FW5 361 aaPredicted RBP3.77□□□□□ -1.81
CD44-229ENST00000528672 EFCAB12Q6NXP0 572 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 MZT2BQ6NZ67 158 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 CFAP161Q6P656 301 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 USP17L6PQ6QN14 398 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 C1orf122Q6ZSJ8 110 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 FAM83AQ86UY5 434 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 LRRTM4Q86VH4 590 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 Q8NA96 180 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 OR56A1Q8NGH5 318 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 SPPL3Q8TCT6 385 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 OTUD7AQ8TE49 926 aaPredicted RBP3.77□□□□□ -1.81
CD44-229ENST00000528672 SH3RF3Q8TEJ3 882 aaPredicted RBP3.77□□□□□ -1.81
CD44-229ENST00000528672 ZNF384Q8TF68 577 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 SCAMP4Q969E2 229 aa3.77□□□□□ -1.81
CD44-229ENST00000528672 MAELQ96JY0 434 aaKnown RBP3.77□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 27.1 ms