RNA–Protein interactions for RNA: ENST00000527299.1

CLNS1A-209, Transcript of chloride nucleotide-sensitive channel 1A, human

TSL 2

Gene CLNS1A, Length 387 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLNS1A-209	ENST00000527299	SIMC1	Q8NDZ2	872 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	IFT81	Q8WYA0	676 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	NCSTN	Q92542	709 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	USP6NL	Q92738	828 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	GPATCH3	Q96I76	525 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	RPGRIP1	Q96KN7	1286 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	PRAM1	Q96QH2	718 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	NDN	Q99608	321 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	CCT7	Q99832	543 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	BPIFA3	Q9BQP9	254 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	PDCD2L	Q9BRP1	358 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	TUBB2B	Q9BVA1	445 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	NUP58	Q9BVL2	599 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	CARD6	Q9BX69	1037 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	NAT10	Q9H0A0	1025 aa	Known RBP	4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	ENKD1	Q9H0I2	346 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	OSBPL5	Q9H0X9	879 aa	Predicted RBP	4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	PARVG	Q9HBI0	331 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	ALG13	Q9NP73	1137 aa	Known RBP	4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	TCF7L2	Q9NQB0	619 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	TBCCD1	Q9NVR7	557 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	SLC5A4	Q9NY91	659 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	MIS18A	Q9NYP9	233 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	SUCLA2	Q9P2R7	463 aa	Predicted RBP	4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	GTF3C4	Q9UKN8	822 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	TTC7A	Q9ULT0	858 aa	Predicted RBP	4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	C2CD2	Q9Y426	696 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	PCDHB2	Q9Y5E7	798 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	FMN1	Q68DA7	1419 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	YTHDC2	Q9H6S0	1430 aa	Known RBP	4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	TMEM94	Q12767	1356 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	KIF24	Q5T7B8	1368 aa		4	□□□□□ -1.77
CLNS1A-209	ENST00000527299	GRIN2D	O15399	1336 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	CPSF1	Q10570	1443 aa	Known RBP	3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	LINC00854	A0A1B0GVQ3	168 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	DYTN	A2CJ06	578 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	TRIM43B	A6NCK2	446 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	CCDC69	A6NI79	296 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	SPTLC2	O15270	562 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	HOXA3	O43365	443 aa	Predicted RBP	3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	DIAPH1	O60610	1272 aa	Known RBP	3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	USO1	O60763	962 aa	Known RBP	3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	CDC45	O75419	566 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	FLOT1	O75955	427 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	GSTA2	P09210	222 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	TOP1	P11387	765 aa	Known RBP	3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	HNRNPL	P14866	589 aa	Known RBP eCLIP	3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	POLR2E	P19388	210 aa	Known RBP	3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	KIF5B	P33176	963 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	MAN1A1	P33908	653 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	PTH2R	P49190	550 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	ACADVL	P49748	655 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	SERPINB8	P50452	374 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	GUCY2F	P51841	1108 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	KIF11	P52732	1056 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	SEC24C	P53992	1094 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	ELL	P55199	621 aa	Predicted RBP	3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	GEMIN4	P57678	1058 aa	Known RBP	3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	BASP1	P80723	227 aa	Known RBP	3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	GPSM2	P81274	684 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	MXRA7	P84157	204 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	PLOD1	Q02809	727 aa	Predicted RBP	3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	FOXF2	Q12947	444 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	FOXI1	Q12951	378 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	MYO1E	Q12965	1108 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	PKP1	Q13835	747 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	RAB33A	Q14088	237 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	CASP8	Q14790	479 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	SPCS2	Q15005	226 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	VPS72	Q15906	364 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	RABL6	Q3YEC7	729 aa	Predicted RBP	3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	ACCSL	Q4AC99	568 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	SLC44A4	Q53GD3	710 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	LACTB2	Q53H82	288 aa	Predicted RBP	3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	TBC1D9B	Q66K14	1250 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	NXN	Q6DKJ4	435 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	C6orf89	Q6UWU4	347 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	NLRP9	Q7RTR0	991 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	SRGAP1	Q7Z6B7	1085 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	GRAMD2A	Q8IUY3	354 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	CHCHD4	Q8N4Q1	142 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	OR52N2	Q8NGI0	321 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	BCAS4	Q8TDM0	211 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	DIS3L	Q8TF46	1054 aa	Known RBP	3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	DYDC1	Q8WWB3	177 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	ANKS1A	Q92625	1134 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	CDHR1	Q96JP9	859 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	EXOC2	Q96KP1	924 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	PPP1R13B	Q96KQ4	1090 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	JAKMIP1	Q96N16	626 aa	Known RBP	3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	ZNF570	Q96NI8	536 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	NEUROD6	Q96NK8	337 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	LRFN3	Q9BTN0	628 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	NDC1	Q9BTX1	674 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	CENPO	Q9BU64	300 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	TRIM5	Q9C035	493 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	FAM192A	Q9GZU8	254 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	CENPH	Q9H3R5	247 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	PLEKHA4	Q9H4M7	779 aa		3.99	□□□□□ -1.77
CLNS1A-209	ENST00000527299	DCTPP1	Q9H773	170 aa		3.99	□□□□□ -1.77

Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms